PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01250A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 325aa    MW: 33816.2 Da    PI: 8.7446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01250AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.46.9e-24121182159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDg+ WrKYGqK++++s++prsY+rCt++   gC++++ v+ +++dp+  ++tY geH+++
  Oropetium_20150105_01250A 121 LDDGHLWRKYGQKDIQNSPHPRSYFRCTHKtdqGCNARRYVQVCETDPSKHVVTYYGEHTCR 182
                                58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26108184IPR003657WRKY domain
PROSITE profilePS5081124.099116184IPR003657WRKY domain
SuperFamilySSF1182901.2E-24119184IPR003657WRKY domain
SMARTSM007745.6E-34121183IPR003657WRKY domain
PfamPF031063.3E-23122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASSSGGDVP ANRAPMAAAV NDVVEARRGV ETLKSFLLQL GDRRAPWAER VADDVLNRLS  60
DATSKLLDAG AASGGQSPAA APSSGRARPQ RSGSSNGNTR KRSFSRRSQR ASSQSRIVTT  120
LDDGHLWRKY GQKDIQNSPH PRSYFRCTHK TDQGCNARRY VQVCETDPSK HVVTYYGEHT  180
CRDPSTNPIV MHAAAAGNLI SFAPASRTTG GAASSSQQMA TDGSATHLST SWCTSHDVFS  240
SSPAGSSFMQ VVGELGAVVV GSAAAVMSPA RTLPATSAPE NGGMTLTRTG GGGTAGPGSV  300
PSSPNSLGFE VGDDDFFRLD LDDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-28115182269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01250A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984468.13e-98probable WRKY transcription factor 70 isoform X2
TrEMBLA0A2T7CD133e-97A0A2T7CD13_9POAL; Uncharacterized protein
STRINGSi036565m7e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-20WRKY DNA-binding protein 46