PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01206A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 406aa    MW: 43826.4 Da    PI: 8.6678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01206AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-5071531128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.................kvkaeekewyfFskrdk 66 
                                lppGfrFhPtdeel+ +yL++++ ++++++  +i++vdiyk++PwdLp +                 k++ ++kewyfFs+rd+
  Oropetium_20150105_01206A   7 LPPGFRFHPTDEELILHYLRNRAGSSPCPVPPIIADVDIYKFNPWDLPcEyyppeihackdprtattKASYGDKEWYFFSPRDR 90 
                                79****************************999**************95489*****99999988665555999********** PP

                        NAM  67 kyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ky++g r+nra+ sgyWkatg+dk+++s+ +ge vg+kk Lvfy gr pkg+kt+W+mheyrl
  Oropetium_20150105_01206A  91 KYPNGIRPNRAAGSGYWKATGTDKPIHSTaTGEGVGVKKALVFYMGRPPKGTKTNWIMHEYRL 153
                                ***************************9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-585186IPR003441NAC domain
PROSITE profilePS5100559.1177186IPR003441NAC domain
PfamPF023653.6E-278153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTNPAMLPPG FRFHPTDEEL ILHYLRNRAG SSPCPVPPII ADVDIYKFNP WDLPCEYYPP  60
EIHACKDPRT ATTKASYGDK EWYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHSTA  120
TGEGVGVKKA LVFYMGRPPK GTKTNWIMHE YRLAADANAG HAYRPMKFRN ASMRLDDWVL  180
CRIYKKTSSH VSSPMAGPPL SDQEQDEPSG FVDETHYAAT SSSAGMILQG TAAFPTMLQA  240
AEQRMPRIPS MSELLSDYPL AHLFDDVGGV HHQDQQQHHA AALLGHPVAS HLLVSNSSSS  300
MSAAGQLLLA ANHASAASTT STAGIIDGGA AGTAKRRRSE ESASALTTTN HHHQTLMLAA  360
KKQPSSNGSS CIGATFQRAN GGSLQAGSLA QLAHPMLLHP NMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-67718917168NO APICAL MERISTEM PROTEIN
1ut4_B7e-67718917168NO APICAL MERISTEM PROTEIN
1ut7_A7e-67718917168NO APICAL MERISTEM PROTEIN
1ut7_B7e-67718917168NO APICAL MERISTEM PROTEIN
3swm_A7e-67718920171NAC domain-containing protein 19
3swm_B7e-67718920171NAC domain-containing protein 19
3swm_C7e-67718920171NAC domain-containing protein 19
3swm_D7e-67718920171NAC domain-containing protein 19
3swp_A7e-67718920171NAC domain-containing protein 19
3swp_B7e-67718920171NAC domain-containing protein 19
3swp_C7e-67718920171NAC domain-containing protein 19
3swp_D7e-67718920171NAC domain-containing protein 19
4dul_A7e-67718917168NAC domain-containing protein 19
4dul_B7e-67718917168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01206A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280291e-122KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.11e-152NAC domain-containing protein 10-like
SwissprotO492551e-78NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A3G2LN221e-171A0A3G2LN22_9POAL; NAC transcription factor
STRINGSi036303m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-79NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]