PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00910A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 292aa    MW: 30895.5 Da    PI: 7.2606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00910AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-051672061155
                                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +R +++ +++  L++l+ +      +K + a++L++A  +Ik+L+
  Oropetium_20150105_00910A 167 KRSQKLGDKITALQQLVSPY-----GKTDTASVLQEAATCIKHLH 206
                                89999*************99.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.29156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-9167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-4167210No hitNo description
Gene3DG3DSA:4.10.280.101.4E-6167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MWNCSAPPSS LLLPFGDNVY MKCESSSSQA GAVVGLDRIL AADYDLCHNL NLSQSIQSLQ  60
APTLFPMHGS HSYLAGFTAT GTSVYNGDAS SPTFAHQSDC TQLPTTHSVK WTAAGETATG  120
GGSRLIRGSS KRLKTTTATA ATTAQGPHRG LRCNVKPRNQ TVKAPSKRSQ KLGDKITALQ  180
QLVSPYGKTD TASVLQEAAT CIKHLHQQIQ ILTASYPEVI NSPTSQQHLA GEDEEEEEEE  240
GAASDLRQRG LCVAPLSPAV VALVSSASGA VRGHRDMAET GDYCWRQLGT L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00910A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750584e-36EU975058.1 Zea mays clone 466236 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792107.11e-100uncharacterized protein LOC112873346
TrEMBLA0A3L6TN371e-100A0A3L6TN37_PANMI; Uncharacterized protein
STRINGPavir.J38538.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-16bHLH family protein