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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_00774A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
GRAS |
| Protein Properties |
Length: 575aa MW: 60859.3 Da PI: 4.8057 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_00774A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 294.4 | 2.9e-90 | 125 | 526 | 1 | 373 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetsekn.. 73
l +lL+++Aea+s ++ el++ +L rl+e++s ++ +m+Rlaa+ft AL+ l +s + +a ++s+ ++++
Oropetium_20150105_00774A 125 LLHLLMAAAEALSGphKSRELTRVILVRLKEMVSLTAGannaaasNMERLAAHFTDALQGLLDGSHPVGRQAAASSHPQQQQhh 208
579**********8556777************77665445666669****************9976644444433332222234 PP
GRAS 74 ..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg 153
+ ++l+a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW +L+qa+ sRp +pp+lRiT+v+++ g
Oropetium_20150105_00774A 209 hsTGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDVAEGVQWSSLMQAMISRPdgMPPPHLRITAVSRSGGG 292
458999***********************************************************766799*********7777 PP
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
+++++e+g+rLa fA+++g pf+f ++ e +++ + r+ +gE+l+ n++l+ ++ ++L + +l +k
Oropetium_20150105_00774A 293 GARAVQEVGRRLAAFAASIGQPFSFGQCRLDSEERFRPATVRMVKGETLVANCALNQTAATTTIRRSAGSVASFLAGMATLGAK 376
***************************999999*********************9877776555555558999*********** PP
GRAS 238 vvvvveqe....adhnse...........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.. 304
vv+vve++ a ++ F++rf+e l+ ysa+ dslea++p++s+ r vEr++l+++i +v+ + ++
Oropetium_20150105_00774A 377 VVTVVEEDqgdaA---DKededsgtvaggGFVARFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRAvd 457
*******953332...3346688999999************************************************9998832 PP
GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
++t + W e+++ GF++vpls ++ +qa+lll ++ dgy++ee s + +vlgWk r+L+s+S+W
Oropetium_20150105_00774A 458 GGDGETTRGGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKARRLLSASVW 526
3455677889*******************************.******88626777************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 575 aa
Download sequence Send
to blast |
MDVTMGDVAG ELEFSGCSST TSSSGSLDAG TYCTWNGLSP VADWGPFCSE DVGQEQDLHG 60
LIESMLCDDT LVGDDHAAGL DPAMFCGDEA PYCYSAGPSS TTTTNPGTPV YDVEGGESPE 120
KGLRLLHLLM AAAEALSGPH KSRELTRVIL VRLKEMVSLT AGANNAAASN MERLAAHFTD 180
ALQGLLDGSH PVGRQAAASS HPQQQQHHHS TGDVLTAFQM LQDMSPYMKF GHFTANQAIL 240
EAVAGDRRVH IVDYDVAEGV QWSSLMQAMI SRPDGMPPPH LRITAVSRSG GGGARAVQEV 300
GRRLAAFAAS IGQPFSFGQC RLDSEERFRP ATVRMVKGET LVANCALNQT AATTTIRRSA 360
GSVASFLAGM ATLGAKVVTV VEEDQGDAAD KEDEDSGTVA GGGFVARFME ELHRYSAVWD 420
SLEAGFPTQS RVRGLVERVI LAPNIAGAVS RAYRAVDGGD GETTRGGWGE WMRGNGFRAV 480
PLSCFNHSQA RLLLGLFNDG YTMEETSPNK IVLGWKARRL LSASVWAPPP MPVPASPPEG 540
ALQSVGMAPV SGGVGRMEFD YIDSFLVEPA YALV*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
