PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00739A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | FAR1 | ||||||||
Protein Properties | Length: 536aa MW: 59593.1 Da PI: 7.0298 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.5 | 1.9e-27 | 39 | 128 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++r+ tr+gC+a++++kk + gkw vtk++ Oropetium_20150105_00739A 39 DFYSTYARSTGFQIRISRYTRSRRDNSIISRRIVCSKEGFNETHPCNglHSDQKQERVGTRVGCQAMIMIKKFDPGKWIVTKFV 122 6*******************************************9999999999****************************** PP FAR1 83 leHnHe 88 ++HnH Oropetium_20150105_00739A 123 KKHNHG 128 *****5 PP | |||||||
2 | FAR1 | 88.5 | 9.7e-28 | 172 | 264 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk ++gkw+v+k+ Oropetium_20150105_00739A 172 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKvmteDGKTKRPRMITRVGCKAMIVVKKLNSGKWMVSKF 255 9********************************************99998889999**************************** PP FAR1 82 eleHnHela 90 e+eHnH+l+ Oropetium_20150105_00739A 256 EKEHNHSLS 264 ******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-24 | 39 | 128 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.0E-25 | 172 | 264 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MENSVMHDYE KEKTIGLEDD TELTPYEGME FASEDAARDF YSTYARSTGF QIRISRYTRS 60 RRDNSIISRR IVCSKEGFNE THPCNGLHSD QKQERVGTRV GCQAMIMIKK FDPGKWIVTK 120 FVKKHNHGPV PQTRSAHQDG NPMEKPHSIE AYPANEPFEG MEFESEEAAK LFYVNYARLN 180 GFRARISRYC RSRRDNSIIS RQIVCSKEGF REIRTKKVMT EDGKTKRPRM ITRVGCKAMI 240 VVKKLNSGKW MVSKFEKEHN HSLSYHKATP GKSNITAGEV DHLDARITDP NEVKTEGYSA 300 GNYCNSTDSL TNTSSNQAIH GKDKGILGSS EENMVAIPAI PLALCMPVTQ NLHGASAVHL 360 DMYPDIRSFH WTTDGAFNLL AAPIKAVPIS YCPAEPIRQP PRSLRDLGPL AGILSDQNNK 420 RKGPNPLVHA TALACGARIV PAEEAALLVK AVESKIRSGE AIISKLPSSN LTSLVPPVSI 480 LSSTSEDEEE NDHSEPLLID VEHNCHDQSS ADMNLQGEPS EFETEADSSF VQPEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00739A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698434.1 | 1e-178 | uncharacterized protein LOC101766516 | ||||
Refseq | XP_021310343.1 | 1e-178 | uncharacterized protein LOC8078835 | ||||
TrEMBL | A0A453IH19 | 0.0 | A0A453IH19_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.Ia03883.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-25 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00739A |