PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00739A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family FAR1
Protein Properties Length: 536aa    MW: 59593.1 Da    PI: 7.0298
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00739AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.51.9e-2739128188
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++  +  +++++++r+ tr+gC+a++++kk + gkw vtk++
  Oropetium_20150105_00739A  39 DFYSTYARSTGFQIRISRYTRSRRDNSIISRRIVCSKEGFNETHPCNglHSDQKQERVGTRVGCQAMIMIKKFDPGKWIVTKFV 122
                                6*******************************************9999999999****************************** PP

                       FAR1  83 leHnHe 88 
                                ++HnH 
  Oropetium_20150105_00739A 123 KKHNHG 128
                                *****5 PP

2FAR188.59.7e-28172264290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re ++kk    + k++r+r+ tr+gCka+++vkk ++gkw+v+k+
  Oropetium_20150105_00739A 172 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKvmteDGKTKRPRMITRVGCKAMIVVKKLNSGKWMVSKF 255
                                9********************************************99998889999**************************** PP

                       FAR1  82 eleHnHela 90 
                                e+eHnH+l+
  Oropetium_20150105_00739A 256 EKEHNHSLS 264
                                ******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2439128IPR004330FAR1 DNA binding domain
PfamPF031011.0E-25172264IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MENSVMHDYE KEKTIGLEDD TELTPYEGME FASEDAARDF YSTYARSTGF QIRISRYTRS  60
RRDNSIISRR IVCSKEGFNE THPCNGLHSD QKQERVGTRV GCQAMIMIKK FDPGKWIVTK  120
FVKKHNHGPV PQTRSAHQDG NPMEKPHSIE AYPANEPFEG MEFESEEAAK LFYVNYARLN  180
GFRARISRYC RSRRDNSIIS RQIVCSKEGF REIRTKKVMT EDGKTKRPRM ITRVGCKAMI  240
VVKKLNSGKW MVSKFEKEHN HSLSYHKATP GKSNITAGEV DHLDARITDP NEVKTEGYSA  300
GNYCNSTDSL TNTSSNQAIH GKDKGILGSS EENMVAIPAI PLALCMPVTQ NLHGASAVHL  360
DMYPDIRSFH WTTDGAFNLL AAPIKAVPIS YCPAEPIRQP PRSLRDLGPL AGILSDQNNK  420
RKGPNPLVHA TALACGARIV PAEEAALLVK AVESKIRSGE AIISKLPSSN LTSLVPPVSI  480
LSSTSEDEEE NDHSEPLLID VEHNCHDQSS ADMNLQGEPS EFETEADSSF VQPEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00739A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698434.11e-178uncharacterized protein LOC101766516
RefseqXP_021310343.11e-178uncharacterized protein LOC8078835
TrEMBLA0A453IH190.0A0A453IH19_AEGTS; Uncharacterized protein
STRINGPavir.Ia03883.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-25FAR1-related sequence 7