PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00632A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 20210 Da PI: 8.5008 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 5 | 49 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd l v+++G ++W++I++ ++ R +k+c++rw ++l Oropetium_20150105_00632A 5 AWSKEEDVVLRAQVRLHGARDWEAISAALP-YRNAKSCRLRWCQHL 49 8*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 58 | 99 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ Ed +v + + ++++ W+ Ia +++ gRt++ +k+rw+ Oropetium_20150105_00632A 58 PFTPTEDAAIVSLQQAYPNK-WSIIAGHIP-GRTDNAIKNRWNA 99 79******************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.766 | 1 | 53 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-17 | 2 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-27 | 2 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-14 | 2 | 51 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 4 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-13 | 5 | 49 | No hit | No description |
SMART | SM00717 | 7.1E-11 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.253 | 57 | 105 | IPR017930 | Myb domain |
CDD | cd00167 | 7.19E-10 | 58 | 101 | No hit | No description |
Pfam | PF00249 | 5.8E-11 | 58 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 58 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKKAAWSKEE DVVLRAQVRL HGARDWEAIS AALPYRNAKS CRLRWCQHLS PDVDDIRPFT 60 PTEDAAIVSL QQAYPNKWSI IAGHIPGRTD NAIKNRWNAV LRKKPPPPQN RVLTLLPLVS 120 GDIWAARRVA VPVIGHTPTV EGDGAGGGDQ GASCLNLFPL APGDVVGGDA SGAAPMDVDS 180 GADKQLTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 3e-22 | 2 | 113 | 10 | 119 | MYB21 |
3osf_D | 3e-22 | 2 | 113 | 10 | 119 | MYB21 |
3osg_A | 3e-22 | 2 | 113 | 10 | 119 | MYB21 |
3osg_D | 3e-22 | 2 | 113 | 10 | 119 | MYB21 |
3zqc_A | 2e-22 | 3 | 117 | 2 | 115 | MYB3 |
3zqc_D | 2e-22 | 3 | 117 | 2 | 115 | MYB3 |
3zqc_G | 2e-22 | 3 | 117 | 2 | 115 | MYB3 |
3zqc_J | 2e-22 | 3 | 117 | 2 | 115 | MYB3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00632A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 3e-65 | myb-related protein 308-like | ||||
Swissprot | Q9SN12 | 3e-32 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2T7CFJ2 | 2e-64 | A0A2T7CFJ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01126.1.p | 1e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-34 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00632A |
Publications ? help Back to Top | |||
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