PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00314A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 261aa MW: 28928 Da PI: 9.8399 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.1 | 3e-25 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s Oropetium_20150105_00314A 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61 89********************************************9986 PP | |||||||
2 | K-box | 43.6 | 1.3e-15 | 94 | 163 | 20 | 89 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 a+L++e+ + ++R++ Ge+L++L++++Lq+Le+ Le++l+++ ++K++ ++++i+ l +k k++ + Oropetium_20150105_00314A 94 ACARLREELAEASLKLRQMRGEELHRLNVQQLQELEKSLESGLSSVLKTKSQKIIDEINGLERKAKNATD 163 67899999999999**************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-33 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.137 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-29 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.26E-37 | 5 | 76 | No hit | No description |
Pfam | PF00319 | 2.0E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.401 | 88 | 173 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.3E-12 | 96 | 162 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA 60 SSSMKQIIDR YDSNSKTLQR SEKEPPKPVE DDGACARLRE ELAEASLKLR QMRGEELHRL 120 NVQQLQELEK SLESGLSSVL KTKSQKIIDE INGLERKAKN ATDRGEFKAK GASKVPPALL 180 CVALRSSFVF SESNYLNHPK LQVSRMARLE MQLGADSEIV LEEGQSSESV TNTSYPRAPV 240 DNGDSSDTSL RLGLSLFASK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_B | 6e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_C | 6e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_D | 6e-18 | 5 | 71 | 3 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00314A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307340.1 | 1e-118 | MADS-box transcription factor 47-like isoform X1 | ||||
Refseq | XP_021307341.1 | 1e-118 | MADS-box transcription factor 47-like isoform X1 | ||||
Swissprot | Q5K4R0 | 1e-110 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | A0A1D6JR01 | 1e-118 | A0A1D6JR01_MAIZE; MADS-transcription factor 68 | ||||
STRING | Pavir.Ia04527.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-49 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00314A |
Publications ? help Back to Top | |||
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