PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00304A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 27074.9 Da PI: 8.9077 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.9e-16 | 140 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k++++s+v + +l lp +f+++++ k ++ +tl de+ ++++ ++ ++++ l++GW +F+ ++g+++gD vF+l Oropetium_20150105_00304A 140 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--KDSIVTLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQL 217 89************************755..4458***************..555555..9*********************** PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ ++f +v+++r+ Oropetium_20150105_00304A 218 IKPTTF--KVHIIRA 230 986777..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-19 | 131 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-22 | 133 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.09E-24 | 138 | 229 | No hit | No description |
PROSITE profile | PS50863 | 11.688 | 140 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-17 | 140 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-14 | 140 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAAVAEEQEM EMSPYEAARE RRVQENKRKM EALNLHHLSA AIKMAPKTPS PMKQKRRRII 60 ETAVVPPSPA RRSRRLAQLP EISYAEVAPH SSERIARTPR KPTDSIYSAR YGSISMKARL 120 EATRKAEELE SQLDPEVPAF VKAMLHSHVV RGFWLGLPSH FCDTYMPKKD SIVTLVDEKD 180 EEFDTNYLAY KKGLSGGWAG FALSHGIRDG DATVFQLIKP TTFKVHIIRA ASDDDDEVAE 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 58 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00304A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345448.1 | 1e-143 | B3 domain-containing protein | ||||
Swissprot | Q10QS9 | 1e-135 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A1E5URN1 | 1e-143 | A0A1E5URN1_9POAL; B3 domain-containing protein | ||||
STRING | Si037266m | 1e-139 | (Setaria italica) | ||||
STRING | Sb01g044910.1 | 1e-139 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-49 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00304A |
Publications ? help Back to Top | |||
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