PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00244A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YA

Protein Properties

Length: 243aa MW: 26385.2 Da PI: 9.1707

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00244A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.9	8.2e-34	132	188	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl k+rkpylheSRh+hA++R+Rg+gGrF Oropetium_20150105_00244A 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKCRKPYLHESRHQHAMKRARGTGGRF 188 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-38	130	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.565	131	191	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-29	133	188	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-25	134	156	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	136	156	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-25	165	188	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MHENGTIMIQ FGHQMPDYDS SATQSTSGSQ QEVSGMSEGS LNEHNDRSGN LDGYTKSDEN 60 KMMSALSLGN PETAYAHQKS DRNQSFAISY PYADSFYGGA VATYGSHAIM HPQMMGMVPS 120 SRVPLPIEPA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKCRKPYLH ESRHQHAMKR 180 ARGTGGRFLN TKQQAEATAG GGGGGSSDAQ RVTANGGLFT KHEHSLPQPG DLRYHHARGG 240 GA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-23	132	194	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00244A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792631.1	1e-145	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q9LVJ7	5e-46	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A1E5VM56	1e-149	A0A1E5VM56_9POAL; Nuclear transcription factor Y subunit A-6 (Fragment)
STRING	Si037269m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	3e-38	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00244A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]