PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_00088A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 18218.6 Da PI: 6.717 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.5 | 4.5e-38 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkCa++Cv+ap+f+ e+ +++fa++hk+FGasn kll+++p+ +r +a+++++yeA+ar+rdPvyG+v++i++l Oropetium_20150105_00088A 12 PCGACKFLRRKCAAECVFAPHFCTEDgAAQFAAIHKVFGASNAAKLLQQVPPGDRGEAAATVTYEAQARLRDPVYGCVAHIFAL 95 7**********************99979******************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+++l+ ++ l+k++ Oropetium_20150105_00088A 96 QQQVATLQMQVLLAKAQ 112 *********99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.451 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MASSGAVGSG APCGACKFLR RKCAAECVFA PHFCTEDGAA QFAAIHKVFG ASNAAKLLQQ 60 VPPGDRGEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA TLQMQVLLAK AQVAQTMAAA 120 AGAQAAAAAS PLLQRWQMEP ESLSTQSSGC YSAPSCDGGS ASMYCFGEQE EGSYTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 8 | 106 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 8 | 106 | 7 | 104 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_00088A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF051734 | 1e-150 | EF051734.1 Zea mays RTCN mRNA, complete cds. | |||
GenBank | KJ728375 | 1e-150 | KJ728375.1 Zea mays clone pUT6657 LOB transcription factor (LOB21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985693.1 | 4e-95 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 4e-55 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1E5WDM2 | 1e-95 | A0A1E5WDM2_9POAL; LOB domain-containing protein 29 | ||||
STRING | Si037727m | 1e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 7e-53 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_00088A |