PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100273220021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HSF | ||||||||
Protein Properties | Length: 234aa MW: 26880.2 Da PI: 5.8481 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.7 | 5.1e-35 | 22 | 114 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl k+y ++ed++++++isw++ g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++ weF+ Ote100273220021|100273220021 22 FLLKTYMMVEDPATDSVISWNDGGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTNR---------WEFS 93 9****************************************************************999.........**** PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++ F+kg+++++++i+r+k++ Ote100273220021|100273220021 94 NDRFRKGERDQICEIRRRKTA 114 ******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-36 | 15 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-52 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.3E-33 | 18 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-18 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.7E-31 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEGEISESAL VEYVRKASPP PFLLKTYMMV EDPATDSVIS WNDGGTAFVV WQPAEFARDL 60 LPTLFKHSNF SSFVRQLNTY GFRKITTNRW EFSNDRFRKG ERDQICEIRR RKTASNKQQP 120 NVQPHAAAES AKDHSSDNEE QRSPSASSSS EFTTLIDENK RLKRENGALN SELEVVKRKC 180 QKLLDLVAVC RGSGERENQS VXXXXXXXXX XXRWFEAVWS EIGSWVREEG EGEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 1e-22 | 22 | 111 | 4 | 104 | Putative transcription factor |
5d5x_B | 1e-22 | 22 | 111 | 4 | 104 | Putative transcription factor |
5d5x_E | 1e-22 | 22 | 111 | 4 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828086.1 | 6e-98 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 3e-68 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A4D9C591 | 3e-97 | A0A4D9C591_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | Migut.J01747.1.p | 2e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |