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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100248070071 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | WRKY | ||||||||
| Protein Properties | Length: 447aa MW: 50015.3 Da PI: 6.9446 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 99.7 | 1.8e-31 | 157 | 214 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ ++ ++ei+Y+g+H+h+k
Ote100248070071|100248070071 157 DDGYNWRKYGQKSVKGSENPRSYYKCTFPNCPTKKKVERNL-EGYITEIVYKGSHTHPK 214
8****************************************.***************85 PP
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| 2 | WRKY | 105.3 | 3.2e-33 | 299 | 357 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+ +d ++v++tYeg+Hnh+
Ote100248070071|100248070071 299 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSNGCPVRKHVERAFHDSRAVITTYEGKHNHD 357
59********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 2.5E-27 | 147 | 215 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 22.722 | 151 | 215 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.48E-24 | 151 | 215 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.7E-33 | 156 | 214 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 3.4E-24 | 157 | 213 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 1.7E-37 | 284 | 359 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.35E-29 | 291 | 359 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 38.503 | 294 | 359 | IPR003657 | WRKY domain |
| SMART | SM00774 | 7.7E-39 | 299 | 358 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.0E-25 | 300 | 357 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009409 | Biological Process | response to cold | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0009651 | Biological Process | response to salt stress | ||||
| GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
| GO:0010200 | Biological Process | response to chitin | ||||
| GO:0010508 | Biological Process | positive regulation of autophagy | ||||
| GO:0042742 | Biological Process | defense response to bacterium | ||||
| GO:0050832 | Biological Process | defense response to fungus | ||||
| GO:0070370 | Biological Process | cellular heat acclimation | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 447 aa Download sequence Send to blast |
MASSGGSLNT AVNSFHYMSS NSFTDLLTSN QDYEQKSSSF SWGLMDSEQN KYSSFPXXXX 60 XXXXXXXXLD SPALFPSSNA LPSPTTGAFA ALLSKEEETT FSDFSFQQGS SKRQRDYDDE 120 SSSITRSGVK SEKTAAIPQE IPQTQTTNYV REQGKSDDGY NWRKYGQKSV KGSENPRSYY 180 KCTFPNCPTK KKVERNLEGY ITEIVYKGSH THPKPSSTRR GSGSSSSSFH EENSSASFGD 240 DDVEQVSSNS QDDYDNGNDR DAKRWKSEDE YVSNNAGCGN RAIREPRVVV QTTSEIDILD 300 DGYRWRKYGQ KVVKGNPNPR SYYKCTSNGC PVRKHVERAF HDSRAVITTY EGKHNHDVPV 360 GRGSGAYTTS RPQAVDTSAM RPPVATRVQA YPSQNQAPYT LQRVQNADND TSKSSFYMNQ 420 MQTQSSNAMS LAKEEPRDFS FFDGFLD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wj2_A | 7e-37 | 157 | 359 | 8 | 78 | Probable WRKY transcription factor 4 |
| 2lex_A | 7e-37 | 157 | 359 | 8 | 78 | Probable WRKY transcription factor 4 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. | |||||
| Binding Motif ? help Back to Top | |||
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| Motif ID | Method | Source | Motif file |
| MP00299 | DAP | Transfer from AT2G38470 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_022890848.1 | 1e-155 | probable WRKY transcription factor 33 | ||||
| Swissprot | Q8S8P5 | 1e-113 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
| TrEMBL | A0A2G9HQ83 | 1e-158 | A0A2G9HQ83_9LAMI; Uncharacterized protein | ||||
| STRING | Migut.J00088.1.p | 1e-141 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2286 | 24 | 60 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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