PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100222250111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 227aa    MW: 24652.7 Da    PI: 9.0307
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100222250111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40101177278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   Cq+e+C+adl +ak yhrrhkvCe+h+ka++++v+g++qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk++ 
  Ote100222250111|100222250111 101 CQAEKCSADLRDAKAYHRRHKVCEHHAKAQAAVVAGIRQRFCQQCSRFHELQEFDDAKRSCRRRLAGHNERRRKNSV 177
                                   **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-3294162IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.39398175IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.02E-37100178IPR004333Transcription factor, SBP-box
PfamPF031101.9E-30101174IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENCGPKASD SISPTFPSKI PITPPLNISQ LFDPYLFICS MNKPSHEPNH SPMTEKMKKD  60
CVAESEDDDV AGGAAPEDDK RKRAASGGAS AKKGDASMKS CQAEKCSADL RDAKAYHRRH  120
KVCEHHAKAQ AAVVAGIRQR FCQQCSRFHE LQEFDDAKRS CRRRLAGHNE RRRKNSVDGG  180
SQAAEGSASG RVKGGGNASV AGGQLKELVC GQMGVQENAS YKHFHVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3794174484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275728.14e-63PREDICTED: squamosa promoter-binding protein 1 isoform X2
SwissprotQ387411e-38SBP1_ANTMA; Squamosa promoter-binding protein 1
SwissprotQ9S7A92e-38SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A075FES22e-65A0A075FES2_SALMI; SQUAMOSA promoter binding protein-like 3 (Fragment)
STRINGVIT_12s0028g03350.t011e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Hyun Y, et al.
    Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles.
    Planta, 2015. 241(1): p. 271-84
    [PMID:25269397]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Ioannidi E, et al.
    Trichome patterning control involves TTG1 interaction with SPL transcription factors.
    Plant Mol. Biol., 2016. 92(6): p. 675-687
    [PMID:27631431]
  5. Jung JH,Lee HJ,Ryu JY,Park CM
    SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
    Mol Plant, 2016. 9(12): p. 1647-1659
    [PMID:27815142]
  6. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]