PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100207980031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 298aa MW: 34307.7 Da PI: 8.3584

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100207980031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.3e-52	24	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy 82 pGfrFhPtdeelv +yL++kve+++++l e ik vdiyk++PwdLp +k++++ekewyfF++r +ky+++ r+nr+t+sg+ Ote100207980031\|100207980031 24 PGFRFHPTDEELVGFYLRRKVEKRPIRL-ELIKLVDIYKYDPWDLPkSKCSTGEKEWYFFCRRGRKYKNSIRPNRVTRSGF 103 9*************************.89***********66888999*********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d++++s+++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Ote100207980031\|100207980031 104 WKATGIDRPIYSSNRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149 ******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.365	22	181	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-53	23	180	IPR003441	NAC domain
Pfam	PF02365	3.2E-26	24	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MELENMSSTI TCNTKEEDDD APLPGFRFHP TDEELVGFYL RRKVEKRPIR LELIKLVDIY 60 KYDPWDLPKS KCSTGEKEWY FFCRRGRKYK NSIRPNRVTR SGFWKATGID RPIYSSNREC 120 IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP TALDKSTKHI DAANPIPQEA EVWTLCRILK 180 RSVSYKKCVP DWREMAAAAA KRNSYNNNPV IDASSETCSV ESNDQNGQSS YISFSAPFTE 240 KKPVVESFAS HDFLSSSQPP SSFPSYMYGD INDFLRHADW EDLRSVVDCA ATANPLYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	24	187	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	24	187	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	24	187	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	24	187	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	24	187	22	174	NAC domain-containing protein 19
3swm_B	2e-47	24	187	22	174	NAC domain-containing protein 19
3swm_C	2e-47	24	187	22	174	NAC domain-containing protein 19
3swm_D	2e-47	24	187	22	174	NAC domain-containing protein 19
3swp_A	2e-47	24	187	22	174	NAC domain-containing protein 19
3swp_B	2e-47	24	187	22	174	NAC domain-containing protein 19
3swp_C	2e-47	24	187	22	174	NAC domain-containing protein 19
3swp_D	2e-47	24	187	22	174	NAC domain-containing protein 19
4dul_A	2e-47	24	187	19	171	NAC domain-containing protein 19
4dul_B	2e-47	24	187	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553891.1	1e-139	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-87	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A346HE90	1e-127	A0A346HE90_9LAMI; NAC042 transcription factor
STRING	Migut.M01549.1.p	1e-122	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]