PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100186010132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25009.3 Da PI: 7.8087 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.2 | 1.4e-25 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +i+n rqvtfskRr g++KKAeELSvLCda+va++ifsstgkl+ Ote100186010132|100186010132 10 KIDNAAARQVTFSKRRRGLFKKAEELSVLCDADVALLIFSSTGKLF 55 69******************************************97 PP | |||||||
2 | K-box | 49.6 | 1.7e-17 | 87 | 167 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++a+L ke+ + ++++h+ Ge+L+ Ls++eLq+Le+ Le++l+++ +kK e ++++i++l++k k l een +Lr++++ Ote100186010132|100186010132 87 SNHARLSKEVAERSHQLKHMRGEELQGLSIEELQRLEKSLETGLSRVIEKKGEKIMKEISRLREKGKLLLEENARLRHQVM 167 56889999999999****************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.628 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-25 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.68E-32 | 2 | 65 | No hit | No description |
PRINTS | PR00404 | 3.0E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.46 | 82 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.9E-15 | 87 | 166 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAREKIQIRK IDNAAARQVT FSKRRRGLFK KAEELSVLCD ADVALLIFSS TGKLFDMKEI 60 LERHKLHAKN LDKLEQPSLE LQLVEDSNHA RLSKEVAERS HQLKHMRGEE LQGLSIEELQ 120 RLEKSLETGL SRVIEKKGEK IMKEISRLRE KGKLLLEENA RLRHQVMIIA SDNQRNNTVT 180 SESDNINIYD EGQSSESVNA SNSTGPPQDH DSSDTSLKLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 64 | 1 | 69 | MEF2C |
5f28_B | 2e-17 | 1 | 64 | 1 | 69 | MEF2C |
5f28_C | 2e-17 | 1 | 64 | 1 | 69 | MEF2C |
5f28_D | 2e-17 | 1 | 64 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097479.1 | 1e-121 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 1e-105 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2G9G7L1 | 1e-122 | A0A2G9G7L1_9LAMI; MADS box transcription factor | ||||
STRING | cassava4.1_015543m | 1e-112 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |