PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100185850231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 287aa MW: 32098.2 Da PI: 9.1095

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100185850231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.1	2.1e-29	82	140	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver+++dpk++ +tY eHnh+ Ote100185850231\|100185850231 82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERNKSDPKMLLVTYYCEHNHD 140 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	73	142	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	77	142	IPR003657	WRKY domain
SMART	SM00774	1.4E-34	81	141	IPR003657	WRKY domain
PROSITE profile	PS50811	32.627	82	142	IPR003657	WRKY domain
Pfam	PF03106	9.3E-26	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDGGSKRRRL ITELEGSENS PENSGGDSPR YDAVSTDAKT ASTSSNKRSR KAVQKRVVSV 60 RIKDVEGIRM NKSDQMNTSP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE 120 RNKSDPKMLL VTYYCEHNHD WPASKTSHHK TAARNVKTPV SXXXXXXXXX XXXXXXXXXX 180 PRDIISNKSN AVVGESKFSA NISEAPLIHN AEFGWFSDFD PTSFTMLESP MLAEDSSIST 240 DSEMAMIFTM REEDESLFAD LGELPECSAV FRRGLAELRR PGVATTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	82	142	15	74	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101421.1	1e-103	probable WRKY transcription factor 65
TrEMBL	A0A0D5Y984	1e-115	A0A0D5Y984_SALMI; WRKY protein
STRING	XP_009595576.1	7e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33