PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100165010051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 308aa    MW: 34329.3 Da    PI: 6.5144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100165010051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29179233259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s+   sYYrCt+++Cpvkk+vers +dp++v++tYeg+Hnh+
  Ote100165010051|100165010051 179 EDGYRWRKYGQKAVKNSP---SYYRCTTQKCPVKKRVERSFQDPSIVITTYEGQHNHH 233
                                   8**************998...8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-30163235IPR003657WRKY domain
SuperFamilySSF1182902.09E-25170235IPR003657WRKY domain
PROSITE profilePS5081127.542173235IPR003657WRKY domain
SMARTSM007741.4E-33178234IPR003657WRKY domain
PfamPF031069.4E-22179233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSEDFTNLFY XXXXXXXXXD DQRRPSAAAY TYSANDLSTT FAADHSSLDK LFDPTYLSFA  60
EFLHGSDDHN SFSGAFGLSP LSSAAVEXXX XXXXXXXEAA RGGGETTPAT PNSSISSSSD  120
EAAAVDEDSN KSKKDVKKTL EDAENDSPKK DPKSKKKVEK KQRQPRFAFM TKSEVDHLED  180
GYRWRKYGQK AVKNSPSYYR CTTQKCPVKK RVERSFQDPS IVITTYEGQH NHHVPATLRG  240
NAAAMFTPSM LTPPLIPQQL LPHLYAGGGN TTLLHQQNVT TQPPQFHQLA DYGLLQDIIP  300
DVYPKEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25168236778Probable WRKY transcription factor 4
2lex_A7e-25168236778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879638.11e-104probable WRKY transcription factor 71
TrEMBLA0A0D5YA041e-123A0A0D5YA04_SALMI; WRKY protein
STRINGVIT_10s0003g02810.t011e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475