PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100150310021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ARF | ||||||||
Protein Properties | Length: 731aa MW: 79751.6 Da PI: 7.3987 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.2 | 1.1e-21 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr+ +lt+GW+ Fv+ ++L Ote100150310021|100150310021 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGXXXXXLLTTGWSAFVNKKKLV 230 99****************************963.3445679**************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 gD v+F + ++el+++++r+ Ote100150310021|100150310021 231 YGDAVLFLR--GGDGELRLGIRRA 252 ********3..378999***9986 PP | |||||||
2 | Auxin_resp | 105.4 | 6.7e-35 | 282 | 360 | 4 | 82 |
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++++s+F+++YnPr+ +s+ +v+++k++k+l++++s GmRfk+++e+edsserr+sG++vgvsd+dp rWp+SkW++L Ote100150310021|100150310021 282 SVRSSSTFDICYNPRVRSSDIIVPYHKFSKSLTQNFSCGMRFKIRLESEDSSERRCSGLIVGVSDVDPARWPGSKWKCL 360 577899************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-38 | 147 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-37 | 148 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.92E-21 | 149 | 251 | No hit | No description |
Pfam | PF02362 | 7.4E-20 | 151 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 151 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-21 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-29 | 282 | 360 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MVCGLFDLNT VNNEDEEASA CGSPSSSAAS GNLELATASS PPSVSMELWH ACAGPLISLP 60 KKGSAVVYFP QGHLEQLPEH PAVAYDLPPH VFCRVVDVKL HADAASDEVY AQVSLIPDQQ 120 IEQKWREGVI ESEAEDEDTE GVGKSMTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYKQQRPSQE LVAKDLHGIE WKFRHIYRGX XXXXLLTTGW SAFVNKKKLV YGDAVLFLRG 240 GDGELRLGIR RAAQVKNGST ILPTTSQQFN ASSIAAVVNA VSVRSSSTFD ICYNPRVRSS 300 DIIVPYHKFS KSLTQNFSCG MRFKIRLESE DSSERRCSGL IVGVSDVDPA RWPGSKWKCL 360 LVRWDDMEVN RLNRVSPWEI ELSGPMSGPN SFVLPGTKRN RLGFPAAKAD LPIHRDGNEV 420 SDFGEPLRFQ KVLQGQEVFA FSSSYAGAEA PRNHLSDMRG FPSLSGFHAG GKSRHLPAEA 480 QNSLERSAVS ESYKFCKVLQ GQETMPILSY GRGPQASQVQ EKSITNGIQM ARNGNCWSTP 540 TQYSASPHLS PSMVRGLSPS SVLMLQHSSP QNSHVSSLIH GYQNKLETSN QDSLCVPQRI 600 PKKFASCEIG RKDGLHGFRS SGAPEVHSQT VLTHCPLPSQ SRFGDDQNFS SMCKDSCRLF 660 GFPLTEGKDA VGKGNNQAAS ASAYGNGSSP LACNEEQLYQ APPLVAKVMV SSCTKASDMH 720 GVRDRLLDIA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-99 | 47 | 381 | 22 | 353 | Auxin response factor 1 |
4ldy_B | 1e-99 | 47 | 381 | 22 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554020.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A191T8S5 | 0.0 | A0A191T8S5_SALMI; Auxin response factor | ||||
STRING | Migut.M01096.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |