PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100124950071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 244aa    MW: 27441.2 Da    PI: 8.0367
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100124950071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-19105159256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tk q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Ote100124950071|100124950071 105 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELKLMPRQVEVWFQNRRARTK 159
                                   678899***********************************************98 PP
2HD-ZIP_I/II122.62e-39105194191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+k q++lLEesF+++++L+p++K++lareL+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+
  Ote100124950071|100124950071 105 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELKLMPRQVEVWFQNRRARTKLKQTEVDCEMLKKCCETLTDENRRLQ 185
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   ke +eL+ +l
  Ote100124950071|100124950071 186 KELQELK-AL 194
                                   ******9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.26E-17100162IPR009057Homeodomain-like
SMARTSM003892.9E-15103165IPR001356Homeobox domain
CDDcd000865.86E-16105162No hitNo description
PROSITE profilePS5007116.52105161IPR001356Homeobox domain
PfamPF000462.8E-16105159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-17105159IPR009057Homeodomain-like
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PfamPF021832.3E-10161195IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.8E-24161204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGLDDFCNTG LVLGLGFSSP ISKKDPTPKN LADPSLTLSL SGETYDLIKK ADSDNNNHLY  60
RQDSAASSFS NVSVKREREI GSEEVDIERI SSRASDEDDD GLIGRKKLRL TKAQSALLEE  120
SFKQHSTLNP KQKQDLAREL KLMPRQVEVW FQNRRARTKL KQTEVDCEML KKCCETLTDE  180
NRRLQKELQE LKALKLAQPL YMQLPAATLT MCPSCERIGP ENAAKTAYAK PHFYNPFSNP  240
SAAC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-139homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV981e-141A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGVIT_00s0732g00010.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]