PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100068630231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 359aa MW: 40428.9 Da PI: 7.1484

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100068630231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	71	107	2	37
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee.kvke 37 + +k+ rr+++NReAAr+sR+RKka++++Le k k Ote100068630231\|100068630231 71 PTDKVMRRLAQNREAARKSRLRKKAYVQQLESsKLKL 107 5789**************************9624444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	66	113	No hit	No description
SMART	SM00338	3.9E-4	70	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.841	72	114	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-8	72	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.42E-7	74	110	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-28	160	235	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNSTSTQFVP SRRMGIYEPI HQMSMWGDFK GLDASSPIIL EVDPKLDNQS EDTSHGTVGP 60 SNKYDQETGK PTDKVMRRLA QNREAARKSR LRKKAYVQQL ESSKLKLLQL EQELGRARQQ 120 GLYSGSALDA SPLGYAGSTN PGIATFEMEY GHWVEEQDRQ ISDLRNALNT ETGELELRIF 180 VDGGMRHYFD LFTMKATAAK ADVFYLMSGM WKTSAERFFF WIGGFRPSEL LKVLLPHLEP 240 LSEQQRLDLG NLAQSCQQAE DALSQGMEKL QQFLGEAIAK QLGEGNYLPQ IGAAIEKLEA 300 LVRFVGQADH LRQETLQQIS RILTTRQAAR GLLALGEYFQ RLRALSSLWS SRPCDSSKL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNSTSTQFVP SRRMGIYEPI HQMSMWGDFK GLDASSPIIL EVDPKLDNQS EDTSHGTVGP  60
SNKYDQETGK PTDKVMRRLA QNREAARKSR LRKKAYVQQL ESSKLKLLQL EQELGRARQQ  120
GLYSGSALDA SPLGYAGSTN PGIATFEMEY GHWVEEQDRQ ISDLRNALNT ETGELELRIF  180
VDGGMRHYFD LFTMKATAAK ADVFYLMSGM WKTSAERFFF WIGGFRPSEL LKVLLPHLEP  240
LSEQQRLDLG NLAQSCQQAE DALSQGMEKL QQFLGEAIAK QLGEGNYLPQ IGAAIEKLEA  300
LVRFVGQADH LRQETLQQIS RILTTRQAAR GLLALGEYFQ RLRALSSLWS SRPCDSSKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097616.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	Q39237	1e-177	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A4D8ZE64	0.0	A0A4D8ZE64_SALSN; Transcription factor TGA
STRING	Migut.L00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]