PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100065460021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WOX
Protein Properties Length: 207aa    MW: 22498.8 Da    PI: 5.7311
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100065460021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.51.7e-112274248
                                  T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHH CS
                      Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWF 48
                                  ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++ F
  Ote100065460021|100065460021 22 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYCF 74
                                  58*****************8678**************************9977 PP
2Wus_type_Homeobox833.6e-272175255
             Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQ 55
                                  ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfy F 
  Ote100065460021|100065460021 21 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYCFG 75
                                  789***************9779******************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000467.4E-92374IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEAQGEDQNG GKNTSYLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPTAE QIQRISAKLR  60
QYGKIEGKNV FYCFGSSSSA SGGGGFVGVG SYGYGSVAME QSFRACSITP SANVGGQNFA  120
WIGVDSYSSP YPFLERKRYI NADQTLETEE EEAAPPPEIE TLPLFPMHGD VKQGWHHRAG  180
GDDAAVAAGS RASLELRLNS YAAGFNV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792214.12e-62PREDICTED: protein WUSCHEL
RefseqXP_016474994.12e-62PREDICTED: protein WUSCHEL-like
SwissprotQ6YBV13e-66WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A4D8ZSM61e-90A0A4D8ZSM6_SALSN; Uncharacterized protein
STRINGXP_009792214.19e-62(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331