PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100035860021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 389aa    MW: 42561.9 Da    PI: 7.4606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100035860021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.9e-31194252259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Ote100035860021|100035860021 194 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 252
                                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.81188254IPR003657WRKY domain
SuperFamilySSF1182902.48E-26192254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-31192254IPR003657WRKY domain
SMARTSM007741.4E-37193253IPR003657WRKY domain
PfamPF031067.7E-26195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCSHFLKTME NYQGDLADIV RSTTAAIDGG SAPASWPFPR NTVNYSSDQD FGDPFSYTRD  60
PLVRNIDTPP LSEFFYGGAG DNSGGVNYPA RGVVEDEMKR PANIFSRMLQ ISPTAKQPCD  120
SEGAAAAPPQ RGLKGPPLLV SNNGSLISPS GSGLQISSPR NTGIKRRKSQ AKKVVCIPAP  180
APANSRATGE IVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM  240
LVITYTSEHN HPWPTQRNAL AGSTRSQASK NNTNAAAKNS SKAEKTANTK QKHTEKCGPL  300
KEEADQELEN EFEAEFDQGF QHTYKPTLAD SSSNHDQDSF FADLGEIGDD PLNLFQQGFP  360
RDDLDPFNFY DWATSTTTAS SGEDLNRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26168255280Disease resistance protein RRS1
5w3x_D6e-26168255280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096716.11e-153probable WRKY transcription factor 14
SwissprotQ9SA805e-84WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2G9I5D21e-165A0A2G9I5D2_9LAMI; Uncharacterized protein
STRINGMigut.H01307.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]