PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032400001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 239aa    MW: 27291 Da    PI: 8.1581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032400001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEde+lv+ +k++G g+W++ ++  g+ R++k+c++rw +yl
  Ote100032400001|100032400001 14 KGPWTPEEDEKLVEHIKKHGQGSWRSLPKLAGLLRCGKSCQLRWTNYL 61
                                  79******************************99************97 PP
2Myb_DNA-binding49.41.1e-1567112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T++E++l++++++ lG++ W++Ia  ++ gRt++++k+ w+++l
  Ote100032400001|100032400001  67 RGPFTPQEEKLIIQLHAILGNR-WAAIACQLP-GRTDNEIKNLWNTHL 112
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-24562IPR009057Homeodomain-like
PROSITE profilePS5129417.47961IPR017930Myb domain
SuperFamilySSF466898.07E-3111108IPR009057Homeodomain-like
SMARTSM007175.9E-151363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001678.41E-121661No hitNo description
PROSITE profilePS5129424.37862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2663117IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PfamPF002497.9E-1567112IPR001005SANT/Myb domain
CDDcd001674.50E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTPE EDEKLVEHIK KHGQGSWRSL PKLAGLLRCG KSCQLRWTNY  60
LRPDIRRGPF TPQEEKLIIQ LHAILGNRWA AIACQLPGRT DNEIKNLWNT HLKKRLIQMG  120
IDPHTHEPSY SAPPSSRHMA QWETARLEAE ARLSKLTPPS SDFFMRLWNS EVGETFRSCC  180
SSVKRESAVC KSSKYYSSNE MEEDSSESAL HLLFDFPTNN DISFLDYTDS FGLCSSNFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
1h8a_C4e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022859765.11e-117transcription factor MYB41-like
SwissprotQ9M2D91e-109MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059PSR11e-126A0A059PSR1_SALMI; MYB-related transcription factor
STRINGMigut.B01718.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154