PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100005190011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 317aa MW: 34936.4 Da PI: 5.1222

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100005190011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	96.2	3.4e-30	27	124	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES.......-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvl.......deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 Fl+k+y++++d++++++isw+e+g++f ++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ Ote100005190011\|100005190011 27 FLTKTYQLVDDRAIDDVISWNEDGSTFXXXxxxxxxxXPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVMPDR------ 101 9*********************9997641111111579*****************************99...... PP TTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkk 101 weF ++ F++g+k+ll++i+r+k Ote100005190011\|100005190011 102 ---WEFCNECFRRGEKKLLCDIQRRK 124 ...*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-32	19	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.7E-45	23	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.58E-29	24	123	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.7E-27	27	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.20.5.170	1.9E-4	181	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAPQPLDRSG SGESTAGDAP RSLPTPFLTK TYQLVDDRAI DDVISWNEDG STFXXXXXXX 60 XXXXPTEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVMPD RWEFCNECFR RGEKKLLCDI 120 QRRKIAPASS ATVAIAAATA AVLPTPAAPP RTVSPSDSGE EQVISSSNSP ARGREFSGST 180 SELVGENERL RKENVQLNKE LSQMKNLCNN IYVLMSNFGD LLPMTRFCEE MQTAVVSAAS 240 SGEESNIRSA AEEISARLFG VPIGVKRGGE GNSDMGLQLQ QPGGDIKSEP MDEDSSGDDV 300 KSSWLMRSNS RNRKVLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	12	123	17	129	Heat shock factor protein 1
5d5v_B	2e-21	12	123	17	129	Heat shock factor protein 1
5d5v_D	2e-21	12	123	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00575	DAP	Transfer from AT5G62020	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076201.1	1e-175	heat stress transcription factor B-2a
Refseq	XP_011076202.1	1e-175	heat stress transcription factor B-2a
Swissprot	Q6Z9C8	6e-76	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A4D9BG03	1e-159	A0A4D9BG03_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.F00357.1.p	1e-150	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2182	24	60

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]