PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.05.00.538.1 | ||||||||
Common Name | Ot05g01270, OT_ostta05g01280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 97aa MW: 11371.1 Da PI: 10.6513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 1 | 44 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd +v+++G++ W+ Ia + g+t kq+ rw++yl gw1.05.00.538.1 1 WTDEEDAFVRALVREHGPKKWAVIADQLV-GKTQKQVYARWRDYL 44 *****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 29.1 | 2.3e-09 | 52 | 92 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W + E+e l++ + G+ W+ ar ++ gR+++ +k++++ gw1.05.00.538.1 52 PWAPFEEEHLIKIQEVIGNQ-WAVLARLLP-GRSPNAIKNKFH 92 89999*************99.*********.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.3E-8 | 1 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.84E-23 | 1 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-12 | 1 | 44 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 1 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-11 | 1 | 44 | No hit | No description |
PROSITE profile | PS51294 | 23.642 | 1 | 48 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-4 | 49 | 97 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.493 | 49 | 97 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.1E-8 | 51 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.05E-4 | 52 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 53 | 94 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
WTDEEDAFVR ALVREHGPKK WAVIADQLVG KTQKQVYARW RDYLQPGLTT RPWAPFEEEH 60 LIKIQEVIGN QWAVLARLLP GRSPNAIKNK FHATRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-23 | 1 | 97 | 7 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-23 | 1 | 97 | 61 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-23 | 1 | 97 | 61 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-23 | 1 | 97 | 7 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-23 | 1 | 97 | 7 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003079224.1 | 1e-65 | SANT/Myb domain | ||||
TrEMBL | A0A1Y5IIV0 | 3e-64 | A0A1Y5IIV0_OSTTA; Myb family transcription factor-like protein | ||||
TrEMBL | Q019P3 | 2e-64 | Q019P3_OSTTA; SANT/Myb domain | ||||
STRING | Q019P3 | 4e-65 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 2e-26 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Entrez Gene | 9833279 |
Publications ? help Back to Top | |||
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