PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_08.0001000114
Common NameOT_ostta08g01730
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Dof
Protein Properties Length: 855aa    MW: 90404.7 Da    PI: 9.2222
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_08.0001000114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof87.41.3e-27455512360
                           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                                      ++ ++c+rC s+ t+fCyynn   +qPry+C++C+ryWt GG lrn+P G+g+rk+++
  fgenesh1_pg.C_Chr_08.0001000114 455 NTPIPCARCGSDRTRFCYYNNGLPTQPRYYCRSCQRYWTDGGILRNLPEGSGKRKDRA 512
                                      56789**************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004489.3E-18124242IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.82E-24125243IPR011006CheY-like superfamily
PROSITE profilePS5011029.148125246IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.0E-24125245No hitNo description
PfamPF000725.7E-14126240IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.59E-20127238No hitNo description
ProDomPD0074784.0E-17458511IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.589458512IPR003851Zinc finger, Dof-type
PfamPF027013.8E-24458511IPR003851Zinc finger, Dof-type
PROSITE patternPS013610460496IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MTRRGNSEPS EGEIAGAYGA LERARASETS KSARGGKRAP TGRVGALVRA LGATVSKDER  60
EILKRCETIA DPTGSGTFEL KKLGDVLLML REEGRLPTST SSETRASRRA TRASFGTERA  120
GDVKSVLIVD DVALVRRIHA GHVGKLGYRT IDARDGAEAL RLYGENHAGL QGILLDVMMP  180
GMDGFQTAGG IRELEQKQAL RRMPIIAVTS LTEKEMQWDD KLASFDGHVD KPTSMSTLAS  240
IFKSMSMTPD LRISENEATG AAHASLLDPH GVKRTRGANM PSSSESDADG NLDGSNEGSS  300
EQNGRKGSNS DRDAEGQRSS GGSGNEEGQN AYVSPRSERR VRSPGPDNRS RRPANATMAG  360
SGKNTSGGNA SDEGSGDASR QGSADEDGEM KSTMDTKAET APESNAKVKD LATGKVPSAD  420
NGDAEIKTAT KTTRASAGKA VENEESPNAK AMEENTPIPC ARCGSDRTRF CYYNNGLPTQ  480
PRYYCRSCQR YWTDGGILRN LPEGSGKRKD RAPLINTNLP QTSVPLAPET APQKPTVPVT  540
TMVSGEANAN APTEMQRAVL MLMTQVAGFD VNHAAKHAGV VASRAGEQVA QAVLQNLGHT  600
SEAIDMAISM AKITGWRIGL SVSAVATASV SQGLNPAEIS NLISTQLPFL ADTLVREISE  660
QAKTMKLMRK SPSGGSDSGG SGGTGEENGG KSATSAKSAS TTATATAMGT LPSTQEALMQ  720
RWMSDLRNFG FGASQGTGMP PANETEIPVA RKPFESNVQA TANLRTIEKS SSSAFEVPKS  780
ASTGAFTVPM PVPRTANAPA PMNFPMNPTA WLAKMNRQAS LRSQQNNSGT PPTQQHFVKT  840
EVPRVDDKTR PERK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840960.10.0Zinc finger, Dof-type
TrEMBLA0A090N4V10.0A0A090N4V1_OSTTA; Zinc finger, Dof-type
STRINGA0A090N4V10.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1304633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-22Dof family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]