PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.C_Chr_07.0001000042 | ||||||||
Common Name | OT_ostta07g00720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 202aa MW: 21199.4 Da PI: 7.9041 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.7 | 9.1e-15 | 80 | 112 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+nC++t+Tp WR+++ g +LCnaCGly +k+ fgenesh1_pg.C_Chr_07.0001000042 80 CVNCKSTETPFWRKDKGGGGSLCNACGLYLAKN 112 *****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-15 | 72 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-19 | 73 | 124 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 16.395 | 74 | 130 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.4E-15 | 74 | 125 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.01E-15 | 79 | 122 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 80 | 105 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-12 | 80 | 112 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MIMAQYAAYA AYARAQTQHV VGFGVPGFGG VGFGGGYPYG VAAYEATSAA RGNGARGRGG 60 EKLGKVRRAK PMKSKVPKVC VNCKSTETPF WRKDKGGGGS LCNACGLYLA KNDAPRPAQL 120 WRRQETSASE IDTNNDTNDS EKTTEGVPSA SVEGEKNSPE KDSESDGGAE TTNEKPSEES 180 PRDERVTENA LKLDVKAGAA E* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839358.1 | 1e-144 | Zinc finger, GATA-type | ||||
TrEMBL | A0A090M2X5 | 1e-143 | A0A090M2X5_OSTTA; Zinc finger, GATA-type | ||||
STRING | A0A090M2X5 | 1e-144 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4198 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16141.1 | 3e-07 | GATA family protein |
Publications ? help Back to Top | |||
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