PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_genewise1.C_Chr_06.00010302
Common NameOT_ostta06g02340
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 327aa    MW: 35709.6 Da    PI: 10.2496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_genewise1.C_Chr_06.00010302genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-144892147
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                        r rW+ eE+ l+v+  k++G   Wk+I +++g ++++ q++s+ qk+
  estExt_genewise1.C_Chr_06.00010302 48 RERWSDEEHALFVESLKKYGRA-WKRIEEYIG-TKSAVQIRSHAQKF 92
                                        78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.66E-154298IPR009057Homeodomain-like
PROSITE profilePS5129419.5684397IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-74494IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-154695IPR006447Myb domain, plants
SMARTSM007179.4E-124795IPR001005SANT/Myb domain
PfamPF002498.9E-124891IPR001005SANT/Myb domain
CDDcd001675.87E-95093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGDQGEAPSS NDTGDEATVT TNDATSDPTT TEGKAVKTRK PYTITKKRER WSDEEHALFV  60
ESLKKYGRAW KRIEEYIGTK SAVQIRSHAQ KFFAKLQKEQ IVASGSEGSG STRKRGADRS  120
TSQSKRSKSS YATDINLEIP PARPKKKPAH PYPRKATSQQ PSGGSGERDN SGGTGKSSGT  180
AQKWPTEASQ EFIASTSSSA AIAAVLSVAC DKMQNNLHQE LRQGYFGIPT GMQPQQGMFA  240
QPGMFPMNAM MSPFVAMNTV SGAPTPPPMT NPQQFLNYAN FFSNYWPQFA NAANANAVNV  300
MFQQQQQQQQ QQQQQQHKQR AGGETK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7400760.0AY740076.1 Ostreococcus tauri LHY-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079866.20.0Myb domain, plants
TrEMBLA0A090M6P90.0A0A090M6P9_OSTTA; Myb domain, plants
TrEMBLA0A454XSK20.0A0A454XSK2_OSTTA; LHY-like protein
STRINGA0A090M6P90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-30MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]