PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1500010222
Common NameOT_ostta15g02170
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 353aa    MW: 39865.1 Da    PI: 8.9731
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1500010222genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11139179245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      g+W++eE ell++   +lG++ W++I++ +g  R +  c+++w+
       1500010222 139 GKWSKEETELLLKMYDELGPK-WSKISKVVG--RPAPACRDKWR 179
                      89*****************99.********8..**********8 PP
2Myb_DNA-binding315.9e-10190255246
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      g W++eE e+lv++v+ +  +                      +W  I++++g +R +  c  rw++
       1500010222 190 GHWSPEETEKLVKLVEAHFEKrgtrpgagpgqgfehltlrdniNWVNISAKLG-TRNEQACLQRWYQ 255
                      78****************9999*******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178250134IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-13112180IPR009057Homeodomain-like
PROSITE profilePS5129413.542133187IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-10133179IPR009057Homeodomain-like
SMARTSM007172.8E-9137184IPR001005SANT/Myb domain
PfamPF002492.0E-10139179IPR001005SANT/Myb domain
CDDcd001678.26E-7140179No hitNo description
PROSITE profilePS500908.525184257IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-12185256IPR009057Homeodomain-like
SuperFamilySSF466892.43E-9186271IPR009057Homeodomain-like
SMARTSM007174.0E-11188259IPR001005SANT/Myb domain
CDDcd001674.31E-6192256No hitNo description
PfamPF139217.9E-8192273No hitNo description
PROSITE profilePS500905.204258311IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGGVDERPAI VRADSENGMG RALIDASVAT HGFGGGGDTS EWDVKFPGQK FGPWAADEMA  60
KMKEIVGRWA NEHGFAEEFI NEKYDFLFHR RQKQGGRGAN LPLSERHAFI ELARELPTRN  120
AKQIYGWILR NMDKSTASGK WSKEETELLL KMYDELGPKW SKISKVVGRP APACRDKWRL  180
AKGGPKKKSG HWSPEETEKL VKLVEAHFEK RGTRPGAGPG QGFEHLTLRD NINWVNISAK  240
LGTRNEQACL QRWYQIAPEM TKTGEWDNKQ DSEMLVGLIE SNTQAAETID WENLVHGRNL  300
SQIRRRWNYL SAKVTDHINI PFRELVHEVA KMTKDETVIA LAQQYAATNA EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A6e-155232497344DNA-binding protein reb1
5eyb_B6e-155232497344DNA-binding protein reb1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003083365.20.0SANT/Myb domain
TrEMBLA0A096PB550.0A0A096PB55_OSTTA; SANT/Myb domain
STRINGA0A096PB550.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-26MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]