PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0900010064
Common NameOT_ostta09g00630
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YC
Protein Properties Length: 274aa    MW: 29541.4 Da    PI: 4.2974
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0900010064genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC31.63.6e-1010472461
       NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlr 61
                +rik+++++d++v +i+  aP++l+ka elf+ +lt  
  0900010064 10 SRIKRLMQKDDEVGKIAGAAPIVLAKALELFVKQLTTT 47
                8*********************************9964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008088.5E-101059IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.83E-101071IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-151058IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPPKPNALAS RIKRLMQKDD EVGKIAGAAP IVLAKALELF VKQLTTTTAD VAALHGAKIT  60
VPQQFDFLSD LVEDAADLPP PPDLNELERE LKEKAEAPAG GKRGGKRARS GKNANTSGDL  120
GDLGDLGGTT TEARSRAKPK PKAPRRRAKK KVEDDFIDDE EEEDFGGDAS ETEDEFDPDE  180
VVEPRARSTR SRRGVARKTY RDDLDEDFED DDVDAAPSKR RAKREEDIAV EEVKEEVEAA  240
NGGDLGGFSS LADDMFAAGS LTADVGADED DYD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839558.11e-138Histone-fold
TrEMBLA0A090M8B41e-137A0A090M8B4_OSTTA; Histone-fold
STRINGA0A090M8B41e-138(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-12NF-YC family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]