PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0600010132
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 287aa    MW: 30962.3 Da    PI: 10.527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0600010132genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143680347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE++ ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
       0600010132 36 AWTEEEHKNFLIGLQKLGKGDWRGISRHFVTTRTPTQVASHAQKY 80
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7342985IPR017930Myb domain
SuperFamilySSF466891.01E-173086IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-173284IPR006447Myb domain, plants
SMARTSM007178.6E-103383IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-113479IPR009057Homeodomain-like
CDDcd001671.11E-83681No hitNo description
PfamPF002497.7E-123680IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLAKPTPFAG RDGTAKARAG QGATNGARTE RKKGVAWTEE EHKNFLIGLQ KLGKGDWRGI  60
SRHFVTTRTP TQVASHAQKY FIRQTNVSKR KRRSSLFDIV AEPTENGDGH TIVHRSTADA  120
ANASTHTKAV GARATNGVHK KTQHHTGGMY VNPRESTNAT RSVDVQQHRV TGSALTTSLS  180
NLADVASREA HYVASHHITQ PVGAIWMHNA TARAQNQQEM GTSAAIKIDE EVHPTFPMIH  240
GAIHGAVASF RTAYGRRRDW PAEPHQPDES DGLDGATEHG LSDGGA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839179.11e-175Myb domain, plants
TrEMBLA0A090M6H01e-174A0A090M6H0_OSTTA; Myb domain, plants
STRINGA0A090M6H01e-175(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-41MYB_related family protein