PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os12g42970.1 | ||||||||
Common Name | LOC4352838, Os12g0624900, OsJ_36935, OSNPB_120624900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 310aa MW: 34830.4 Da PI: 7.6726 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.4 | 7e-17 | 239 | 273 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l LOC_Os12g42970.1 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRL 273 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0023 | 154 | 203 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-5 | 154 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-4 | 158 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.187 | 233 | 269 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-13 | 233 | 287 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-13 | 237 | 296 | No hit | No description |
CDD | cd00202 | 3.15E-12 | 238 | 295 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-12 | 238 | 271 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-14 | 239 | 273 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 239 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MDVHPPNAAA SSLEELFPHQ PATESDRSGI EWLSVYVEDC LSTSASCTNP VSAELPPITM 60 ASQGAAKPKL PPRSSTNARK KKRSLASVIS DTDDQHCITL FVEPPLLLLD HKDWLAESEL 120 ILPKKDKDEE LVQEQEQEEE ENYKMSAGMQ FQQEQLVITC SYCLSSQSPQ WWDGPSGPTC 180 DACRLRIEAR NGHTTSSKKR YGQEIDKEQD IGKRRDKKKI KKAVYVNDEL LSEEPMKRCT 240 HCLSYKTPQW RTGPLGPKTL CNACGVRFKS GRLLPEYRPA NSPTFVSDIH SNSHKKVMQL 300 RNSVPHPRK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 213 | 221 | RRDKKKIKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.11382 | 0.0 | callus| flower| leaf| panicle| seed| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32986630 | 0.0 | ||||
Expression Atlas | Q2QLX6 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os12g42970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os12g42970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK101421 | 0.0 | AK101421.1 Oryza sativa Japonica Group cDNA clone:J033038C04, full insert sequence. | |||
GenBank | EU847016 | 0.0 | EU847016.1 Oryza sativa Japonica Group clone KCS030C12 GATA zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618342.1 | 0.0 | uncharacterized protein LOC4352838 | ||||
TrEMBL | A0A0E0JCN7 | 0.0 | A0A0E0JCN7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RK95 | 0.0 | A0A0E0RK95_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZMY1 | 0.0 | A2ZMY1_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1R813 | 0.0 | I1R813_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q2QLX6 | 0.0 | Q2QLX6_ORYSJ; GATA zinc finger family protein, expressed | ||||
STRING | ORUFI12G21640.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0624900-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA12G18290.2 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA12G0166900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-35 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os12g42970.1 |
Entrez Gene | 4352838 |
Publications ? help Back to Top | |||
---|---|---|---|
|