PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g13170.2
Common NameLOC4351839, Os12g0233800, OsJ_35659
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 391aa    MW: 41420.4 Da    PI: 7.3902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g13170.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.97.8e-22293355163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN++L++e+++++ke+++l s++
  LOC_Os12g13170.2 293 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELLSKN 355
                       89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-39142267No hitNo description
Gene3DG3DSA:1.20.5.1704.8E-17287352No hitNo description
SMARTSM003381.7E-21293357IPR004827Basic-leucine zipper domain
PfamPF001708.6E-21293355IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415295358IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-11296352No hitNo description
CDDcd147022.48E-23298349No hitNo description
PROSITE patternPS000360300315IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGSSGADAPT KTSKASAPQE QQPPASSSTA TPAVYPDWAN FQGYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYAMA SPNGNADPTG  120
TTTTAAAAAA GETDGKSSEG KEKSPIKRSK GSLGSLNMIT GKNSTEHGKT SGASANGAIS  180
QSGESGSESS SEGSEANSQN DSHHKESGQE QDGEVRSSQN GVSRSPSQAK LNQTMAIMPM  240
TSSGPVPAPT TNLNIGMDYW ANTASSTPAI HGKATPTAAP GSMVPGEQWV QDERELKRQR  300
RKQSNRESAR RSRLRKQAEC EELAQRAEVL KQENTSLRDE VNRIRKEYDE LLSKNSSLKE  360
KLEDKQHKTD EAGVDNKLQH SGDDSQKKGN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315RRSRLRK
2309316RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.22340.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329757850.0
Expression AtlasQ2QVD7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g13170.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g13170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619718.10.0bZIP transcription factor 68 isoform X2
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLQ2QVD70.0Q2QVD7_ORYSJ; BZIP transcription factor family protein, expressed
TrEMBLQ406250.0Q40625_ORYSA; DNA-binding factor of bZIP class
STRINGOGLUM12G08090.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.16e-93basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]
  3. Nantel A,Quatrano RS
    Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.
    J. Biol. Chem., 1996. 271(49): p. 31296-305
    [PMID:8940135]