PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g06010.1

Common Name

Os12g0156200

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 1765aa MW: 198103 Da PI: 8.9613

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g06010.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.4	2.7e-07	1664	1710	1	47
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 eke kr rr NRe+Ar +R++a +eL++kv+ L+++N+++kk LOC_Os12g06010.1 1664 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKK 1710 89*****************************************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56219	1.31E-28	178	357	IPR005135	Endonuclease/exonuclease/phosphatase
Pfam	PF03372	1.6E-7	181	351	IPR005135	Endonuclease/exonuclease/phosphatase
Gene3D	G3DSA:3.60.10.10	5.2E-13	201	358	IPR005135	Endonuclease/exonuclease/phosphatase
SuperFamily	SSF56672	5.11E-18	510	852	No hit	No description
PROSITE profile	PS50878	14.677	604	886	IPR000477	Reverse transcriptase domain
CDD	cd01650	1.26E-60	617	885	No hit	No description
Pfam	PF00078	7.1E-39	623	855	IPR000477	Reverse transcriptase domain
Pfam	PF13966	2.3E-21	1142	1237	IPR026960	Reverse transcriptase zinc-binding domain
SuperFamily	SSF53098	1.64E-12	1357	1468	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	6.5E-5	1360	1438	IPR012337	Ribonuclease H-like domain
CDD	cd06222	1.44E-20	1361	1459	No hit	No description
Pfam	PF13456	3.1E-26	1362	1460	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.3E-5	1661	1710	No hit	No description
SMART	SM00338	0.0018	1664	1720	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.29E-11	1669	1710	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009009	anatomy	plant embryo
PO:0001081	developmental stage	mature plant embryo stage
PO:0007042	developmental stage	whole plant fruit formation stage

Sequence ? help Back to Top
Protein Sequence Length: 1765 aa Download sequence Send to blast
MLRDMNDQPT RVDAFDGFDI REGKGEDSID SQLADQTNML HVSEVASLGQ KKGKDLVSKE 60 TSSIPSMEMI PAIRDLNVQQ VSFGDGSTEE FGSPTKRKAL PTTKSSGIVQ QAVLEYGQRG 120 AEETASSTRA MKRLKKGVEA NTGVEDMEAT SLGAAGKLAG PMRGQSVEKM SRLRGRLGLR 180 GFTGVSSEGM SGGLALYWDE SVSVDVKDIN KRYIDAYVQL SPEEPQWHVT FVYGEPRVEN 240 RHRMWSLLRT IHQSSSLPWA VIGDFNETMW QFEHFSRTPR GEPQMQDFRD VLQDCELHDL 300 GFKGVPHTYD NKREGWRNVK VRLDRVVADD KWRDIYSTAQ VVHLVSPCSD HCPILLNLVV 360 KDPHQLRQKC LHYEIVWERE PEATQVIEEA WVVAGEKADL GDINKALAKV MTALRSWSRA 420 KVKNVGRELE KARKKLAELI ESNADRTVIR NATDHMNELL YREEMLWLQR SRVNWLKDED 480 RNTKFFHSRA VWRAKKNKIS KLRDANETVH SSTMKLESMA TEYFQDVYTA DPNLNPETVT 540 RLIQEKVTDI MNEKLCEDFT EDEISQAIFQ IGPLKSPGPD GFPARFYQRN WGTIKADIIG 600 AVRRFFQTGL MPEGVNDTAI VLIPKKEQPV DLRDFRPISL CNVVYKVVSK CLVNRLRPIL 660 DDLVSVEQSA FVQGRMITDN ALLAFECFHA MQKNKKANHA ACAYKLDLSK AYDRVDWRFL 720 EMAMNKLGFA RRWVNWIMKC VTSVRYMVKF NGTLLQSFAP TRGLRQGDPL LPFLFLFVAD 780 GLSLLLKEKV AQNSLTPFKV CRAAPGISHL LFADDTLLFF KAHQREAEVV KEVLSSYAMG 840 TGQLINPAKC SILMGGASTP AVSEAISEIL QVERDRFEDR YLGFPTPEGR MHKGRFQSLQ 900 AKIWKRVIQW GENHLSTGGK EVLIKAVIQA IPVYVMGIFK LPESVIDDLT KLTKNFWWDS 960 MNGQRKTHWK AWDSLTKPKS LGGLGFRDYR LFNQALLARQ AWRLITYPDS LCARVLKAKY 1020 FPHGSLIDTS FGSNSSPAWR SIEYGLDLLK KGIIWRVGNG NSIRIWRDSW LPRDHSRRPI 1080 TGKANCRLKW VSDLITEDGS WDVPKIHQYF HNLDAEVILN ICISSRSEED FIAWHPDKNG 1140 MFSVRSAYRL AAQLVNIEES SSSGTNNINK AWEMIWKCKV PQKVKIFAWR VASNCLATMV 1200 NKKKRKLEQS DMCQICDREN EDDAHALCRC IQASQLWSCM HKSGSVSVDI KASVLGRFWL 1260 FDCLEKIPEY EQAMFLMTLW RNWYVRNELI HGKSAPPTET SQRFIQSYVD LLFQIRQAPQ 1320 ADLVKGKHVV RTVPLKGGPK YRVLNNHQPC WERPKDGWMK LNVDGSFDAS SGKGGLGMIL 1380 RNSAGDIIFT SCKPLERCNN PLESELRACV EGLKLAIHWT LLPIQVETDC ASVVQLLQGI 1440 GRDFSVLANI IHEARHLLQT PSRTNTKVTT QKQTLRPNAT AHCMPTDRPT EPGPRGGPGG 1500 HPSRRFRPPS HPLTRGPHTH AAPPLAAALA CPHGEQPDAK ILPAATPPMS DDHSGGGGEQ 1560 RQCRRGFAVD VVELGAALAL ADMAGAAVKP AMQLQLQPTA AQEEDEEMAT TRLSLQLGNN 1620 VGSIIQSSSC SSSGSSAGLP APPPPPPPAT AYGTKPLHML TEEEKEAKRL RRVLANRESA 1680 RQTILRRQAI RDELARKVAD LSTQNESMKK LKLAINSNDV VFGGAGEGDS DAGVPLTEGD 1740 KQAAQRTGTA SSFAFLVLIN LLVV*

Sequence ? help Back to Top

Protein Sequence Length: 1765 aa Download sequence Send to blast

MLRDMNDQPT RVDAFDGFDI REGKGEDSID SQLADQTNML HVSEVASLGQ KKGKDLVSKE  60
TSSIPSMEMI PAIRDLNVQQ VSFGDGSTEE FGSPTKRKAL PTTKSSGIVQ QAVLEYGQRG  120
AEETASSTRA MKRLKKGVEA NTGVEDMEAT SLGAAGKLAG PMRGQSVEKM SRLRGRLGLR  180
GFTGVSSEGM SGGLALYWDE SVSVDVKDIN KRYIDAYVQL SPEEPQWHVT FVYGEPRVEN  240
RHRMWSLLRT IHQSSSLPWA VIGDFNETMW QFEHFSRTPR GEPQMQDFRD VLQDCELHDL  300
GFKGVPHTYD NKREGWRNVK VRLDRVVADD KWRDIYSTAQ VVHLVSPCSD HCPILLNLVV  360
KDPHQLRQKC LHYEIVWERE PEATQVIEEA WVVAGEKADL GDINKALAKV MTALRSWSRA  420
KVKNVGRELE KARKKLAELI ESNADRTVIR NATDHMNELL YREEMLWLQR SRVNWLKDED  480
RNTKFFHSRA VWRAKKNKIS KLRDANETVH SSTMKLESMA TEYFQDVYTA DPNLNPETVT  540
RLIQEKVTDI MNEKLCEDFT EDEISQAIFQ IGPLKSPGPD GFPARFYQRN WGTIKADIIG  600
AVRRFFQTGL MPEGVNDTAI VLIPKKEQPV DLRDFRPISL CNVVYKVVSK CLVNRLRPIL  660
DDLVSVEQSA FVQGRMITDN ALLAFECFHA MQKNKKANHA ACAYKLDLSK AYDRVDWRFL  720
EMAMNKLGFA RRWVNWIMKC VTSVRYMVKF NGTLLQSFAP TRGLRQGDPL LPFLFLFVAD  780
GLSLLLKEKV AQNSLTPFKV CRAAPGISHL LFADDTLLFF KAHQREAEVV KEVLSSYAMG  840
TGQLINPAKC SILMGGASTP AVSEAISEIL QVERDRFEDR YLGFPTPEGR MHKGRFQSLQ  900
AKIWKRVIQW GENHLSTGGK EVLIKAVIQA IPVYVMGIFK LPESVIDDLT KLTKNFWWDS  960
MNGQRKTHWK AWDSLTKPKS LGGLGFRDYR LFNQALLARQ AWRLITYPDS LCARVLKAKY  1020
FPHGSLIDTS FGSNSSPAWR SIEYGLDLLK KGIIWRVGNG NSIRIWRDSW LPRDHSRRPI  1080
TGKANCRLKW VSDLITEDGS WDVPKIHQYF HNLDAEVILN ICISSRSEED FIAWHPDKNG  1140
MFSVRSAYRL AAQLVNIEES SSSGTNNINK AWEMIWKCKV PQKVKIFAWR VASNCLATMV  1200
NKKKRKLEQS DMCQICDREN EDDAHALCRC IQASQLWSCM HKSGSVSVDI KASVLGRFWL  1260
FDCLEKIPEY EQAMFLMTLW RNWYVRNELI HGKSAPPTET SQRFIQSYVD LLFQIRQAPQ  1320
ADLVKGKHVV RTVPLKGGPK YRVLNNHQPC WERPKDGWMK LNVDGSFDAS SGKGGLGMIL  1380
RNSAGDIIFT SCKPLERCNN PLESELRACV EGLKLAIHWT LLPIQVETDC ASVVQLLQGI  1440
GRDFSVLANI IHEARHLLQT PSRTNTKVTT QKQTLRPNAT AHCMPTDRPT EPGPRGGPGG  1500
HPSRRFRPPS HPLTRGPHTH AAPPLAAALA CPHGEQPDAK ILPAATPPMS DDHSGGGGEQ  1560
RQCRRGFAVD VVELGAALAL ADMAGAAVKP AMQLQLQPTA AQEEDEEMAT TRLSLQLGNN  1620
VGSIIQSSSC SSSGSSAGLP APPPPPPPAT AYGTKPLHML TEEEKEAKRL RRVLANRESA  1680
RQTILRRQAI RDELARKVAD LSTQNESMKK LKLAINSNDV VFGGAGEGDS DAGVPLTEGD  1740
KQAAQRTGTA SSFAFLVLIN LLVV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1201	1206	KKKRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.2235	0.0	callus

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	33465890	0.0
Expression Atlas	Q2QXH7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g06010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g06010

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY333186	0.0	AY333186.1 Oryza sativa (japonica cultivar-group) bZIP-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877668.1	0.0	uncharacterized protein LOC4351546
TrEMBL	Q2QXH7	0.0	Q2QXH7_ORYSJ; Os12g0156200 protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	2e-07	bZIP family protein

Link Out ? help Back to Top
Phytozome	LOC_Os12g06010.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]