PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g02400.1

Common Name

LOC107279783, OsJ_35004

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 338aa MW: 37541.6 Da PI: 5.7689

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g02400.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73.5	2.8e-23	140	201	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dgy+WrKYG K+++g++f+rsY+rCt++ gC+++k+++++ ++dp ++++tY++eH+++ LOC_Os12g02400.1 140 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQEdKNDPPMFQVTYSNEHTCT 201 8*************************99999***9862579***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	1.31E-21	132	201	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.6E-23	133	201	IPR003657	WRKY domain
SMART	SM00774	2.4E-33	139	202	IPR003657	WRKY domain
Pfam	PF03106	5.3E-25	140	200	IPR003657	WRKY domain
PROSITE profile	PS50811	17.373	140	203	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAVTESVCLS DEQQAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HAMRALNVAL 60 SVMNQPHASS SSSAAAAAGG HHFPVMTMIK AESTPANSPA ADVSDNHVAG KARRSSPAKR 120 RRINCEDKSS WVYHTVVPHE DGYQWRKYGE KKIQGTHFTR SYFRCTYRDD RGCQATKQIQ 180 QEDKNDPPMF QVTYSNEHTC TTTRLINNTN NNPAALHSLT ANPNGHPDDD SDDTILTKMI 240 KQEQQAAWLP SPPPDLTTIS NNFDETPGLH VSQEVPPCSS NSSAISHYAD EFDHHQMGQQ 300 LETTVMEEAL GLGADLDDPY FYDPNLLLIY ENLMNCY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-13	140	200	9	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	122	KRRRI

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QYK2

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g02400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g02400

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX842244	0.0	BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619940.1	0.0	probable WRKY transcription factor 69 isoform X1
TrEMBL	Q2QYK2	0.0	Q2QYK2_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRING	OGLUM12G01320.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5045	26	63
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	7e-18	WRKY family protein

Link Out ? help Back to Top
Phytozome	LOC_Os12g02400.1
Entrez Gene	107279783

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]