PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g08410.1 | ||||||||
Common Name | Os11g0187200, OSNPB_110187200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 432aa MW: 44556.5 Da PI: 7.2137 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 363 | 396 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ + + LOC_Os11g08410.1 363 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 396 *****************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.7E-17 | 357 | 407 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.231 | 357 | 395 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-14 | 359 | 420 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 361 | 396 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.64E-16 | 362 | 418 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 363 | 388 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-16 | 363 | 397 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV 60 ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG 120 EDMETEALDV KPVVGVGAGG AMGAHVAGGV GAPGAFPESK QLVPWPCAVG AGASAPGAAP 180 DNRLLALPDV RFDALTAEGA APGGERGKTI PDSVSKNGLP TLPGVRSATP TAPPATPFRL 240 EWDHAAAPSS SATTTPSDSS LSSPPSLSSV FPRIARVFPS RTKPRRRRTL RRQHWSLICP 300 LHLVPVAAAA DAARGKSISE LNASASAATD AGTPSINDGG GGSYHRRVVG RQRNRQVRKD 360 RRCSHCGTSE TPQWRMGPDG PGTLCNACGI RSKMDRLLPE YRPSTSPSFN GDEHSNRHRK 420 VLKLREKKGR D* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53P56 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g08410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g08410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC128644 | 0.0 | AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q53P56 | 0.0 | Q53P56_ORYSJ; GATA zinc finger family protein | ||||
STRING | OS11T0187200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12777 | 24 | 34 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 4e-26 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g08410.1 |
Publications ? help Back to Top | |||
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