PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g07700.1
Common NameLOC107275351, Os11g0179300, OsJ_33175, OSNPB_110179300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 268aa    MW: 28532.7 Da    PI: 9.2053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g07700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.98.6e-19551923128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgk....rknratk..sgyWkatgk 88 
                       p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ + ++   fF++ +++    g     + +ra+k   g+W+ +  
  LOC_Os11g07700.1  55 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHATSAHAFFVHDHESVGgGGGggrrKVQRAVKngGGVWRIQKG 145
                       78******************99999777.55655.**********855444444445666666666532223332445555445889**9988 PP

               NAM  89 dkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++l+          +  +v  ++ L f+  r+ +++++ Wvmhey++
  LOC_Os11g07700.1 146 EVAILTIvrgggggggELDVVYKRRNLSFH--RRGESSSSGWVMHEYEI 192
                       888888777777664333449999******..5555679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-2642207IPR003441NAC domain
PROSITE profilePS5100522.35153208IPR003441NAC domain
PfamPF023657.6E-1455192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASTSRKRSA RSLQEDEQTS SAAEAPAAVR EDEERVAVAG MEAWRFGFSR FSWFPAFKFD  60
PTDADIVASY LLPRALYGRG HAAVIQDDVS RCEPWTLMRE HGHATSAHAF FVHDHESVGG  120
GGGGGRRKVQ RAVKNGGGVW RIQKGEVAIL TIVRGGGGGG GELDVVYKRR NLSFHRRGES  180
SSSGWVMHEY EITSPPLPAT VLSRIRATPR AKDKKLCIKE EPSCSTSAAG ERSGPNPDHT  240
AAGAGDSATA NHNNTTSAAT TTMAAAV*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53NP5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g07700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g07700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340440.0AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616128.10.0NAC domain-containing protein 89
TrEMBLQ53NP50.0Q53NP5_ORYSJ; Os11g0179300 protein
STRINGORUFI11G04770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Representative plantOGRP1194335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-09NTM1-like 8
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]