PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g06170.2

Common Name

Os11g0160500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 201aa MW: 22517.2 Da PI: 9.4183

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g06170.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.6e-11	36	94	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ + l++e+ LOC_Os11g06170.2 36 KRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQRDTSGLTAEN 94 9**********************************************999988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-15	32	96	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	34	97	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-9	36	93	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.08E-11	36	87	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-11	36	90	No hit	No description
CDD	cd14703	1.41E-15	37	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009047	anatomy	stem
PO:0007010	developmental stage	whole plant fruit ripening stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDGESSLFEG ESAPPDYAKK AMPADRLAEL ALLDPKRAKR ILANRQSAAR SKERKIKYTG 60 ELERKVQTLQ TEATTLSTQL TLLQRDTSGL TAENRELKLR LQSMEEQAKL RDALNDALRE 120 EVQRLKIAAG QVPNMNGNSF NGGLQQQQQQ QMPTYFSQQQ QMHYLSGHQG RHHHPNNPHN 180 SLNGGQSMSG QTLNDSMDFM *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.53732	0.0	callus\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32984809	0.0
Expression Atlas	Q84LF3	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in dividing cells, present in leaves, roots and seedlings. {ECO:0000269\|PubMed:15108305, ECO:0000269\|PubMed:15824315}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269\|PubMed:11432846, ECO:0000269\|PubMed:12124400, ECO:0000269\|PubMed:15108305, ECO:0000269\|PubMed:15824315, ECO:0000269\|PubMed:17947581, ECO:0000269\|PubMed:19820165, ECO:0000269\|PubMed:20547563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g06170.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269\|PubMed:15108305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g06170

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY224425	0.0	AY224425.1 Oryza sativa (japonica cultivar-group) isolate 20135 bZIP-like protein mRNA, complete cds.
GenBank	CT828502	0.0	CT828502.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA011L18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617778.1	1e-143	transcription factor VIP1
Swissprot	Q9MA75	1e-58	VIP1_ARATH; Transcription factor VIP1
TrEMBL	Q84LF3	1e-144	Q84LF3_ORYSJ; BZIP-like protein
STRING	ORUFI11G03840.1	1e-142	(Oryza rufipogon)
STRING	ORGLA11G0036500.1	1e-142	(Oryza glaberrima)
STRING	OBART11G03920.1	1e-144	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G43700.1	7e-47	VIRE2-interacting protein 1

Link Out ? help Back to Top
Phytozome	LOC_Os11g06170.2

Publications ? help Back to Top
Cooper B, et al. A network of rice genes associated with stress response and seed development. Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50 [PMID:12684538] Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032] Wang Y, et al. The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus. New Phytol., 2014. 203(4): p. 1266-81 [PMID:24865527] Xu DB, et al. A G-protein β subunit, AGB1, negatively regulates the ABA response and drought tolerance by down-regulating AtMPK6-related pathway in Arabidopsis. PLoS ONE, 2015. 10(1): p. e0116385 [PMID:25635681] Chen J, et al. ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters. J. Exp. Bot., 2016. 67(5): p. 1327-38 [PMID:26689855] Tsugama D,Liu S,Takano T VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis. Plant Signal Behav, 2016. 11(6): p. e1187358 [PMID:27171129] Tsugama D,Liu S,Takano T The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots. Plant Physiol., 2016. 171(2): p. 1355-65 [PMID:27208231] Takeo K,Ito T Subcellular localization of VIP1 is regulated by phosphorylation and 14-3-3 proteins. FEBS Lett., 2017. 591(13): p. 1972-1981 [PMID:28542772] Wang L,Lacroix B,Guo J,Citovsky V The Agrobacterium VirE2 effector interacts with multiple members of the Arabidopsis VIP1 protein family. Mol. Plant Pathol., 2018. 19(5): p. 1172-1183 [PMID:28802023]