PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g39130.1 | ||||||||
Common Name | LOC4349237, MADS56, Os10g0536100, OsJ_32282, OSJNBb0060I05.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26305.1 Da PI: 10.0264 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 8.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye++s LOC_Os10g39130.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 61 | 4.6e-21 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +++ ++ + + L k++e L ++ R++lGe+Le s++eL+ Le +Leksl kiR kK+ell +qi +l++ke+ l ++n++Lr k LOC_Os10g39130.1 79 NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKH 171 445678889999*****************************************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-41 | 3 | 79 | No hit | No description |
Pfam | PF00319 | 4.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-21 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.494 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA 60 PSLQKTIDRY KAYTKDHVNN KTIQQDIQQV KDDTLGLAKK LEALDESRRK ILGENLEGFS 120 IEELRGLEMK LEKSLHKIRL KKTELLEQQI AKLKEKERTL LKDNENLRGK HRNLEAAALV 180 ANHMTTTTAP AAWPRDVPMT SSTAGAADAM DVETDLYIGL PGTERSSNRS ETG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_B | 9e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_C | 9e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_D | 9e-18 | 1 | 77 | 1 | 76 | MEF2C |
6byy_A | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_A | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_B | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_C | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6bz1_D | 9e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.37813 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | P0C5B2 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g39130.1 |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | LOC_Os10g39130 | |||||
IntAct | Search P0C5B2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g39130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070135 | 0.0 | AK070135.1 Oryza sativa Japonica Group cDNA clone:J023043P08, full insert sequence. | |||
GenBank | AY551919 | 0.0 | AY551919.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614799.1 | 1e-171 | MADS-box transcription factor 56 | ||||
Swissprot | P0C5B2 | 1e-172 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0E0R1U4 | 1e-169 | A0A0E0R1U4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0E0R1U5 | 1e-170 | A0A0E0R1U5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G17990.1 | 1e-170 | (Oryza rufipogon) | ||||
STRING | OS10T0536100-01 | 1e-170 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 8e-69 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g39130.1 |
Entrez Gene | 4349237 |