PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g35300.1 | ||||||||
Common Name | LOC4349003, Os10g0496000, OSNPB_100496000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 24655.6 Da PI: 9.4789 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.4 | 6.4e-33 | 77 | 133 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr+++k++ LOC_Os10g35300.1 77 PRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRA 133 679***********************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 26.468 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-30 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-17 | 85 | 123 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSSPFLGSSS SSASSPLSYL TPPRPPPPPP PLLMGQGYAA AANGGIGGGG VEAVNAAAAP 60 RQGGRHAGHP PLPRPPPRQC PRCGSANTKF CYYNNYSRTQ PRYLCKACRR HWTEGGTLRD 120 VPVGGGRKNS KRAAGGGKAG ATASTAASAH VVAPAAAPPT SSSFPDLLRQ MLMAPATAGG 180 GGGYSIDLTA WQQMAAFAAP PQAATGDVGG AVGAASTAAP DANCGGGGVQ YWNGWLQDDM 240 PGLDGSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55986 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116633934 | 0.0 | ||||
Expression Atlas | Q7G2G1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g35300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g35300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109091 | 0.0 | AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614315.1 | 1e-175 | dof zinc finger protein 1-like | ||||
TrEMBL | Q7G2G1 | 1e-173 | Q7G2G1_ORYSJ; Dof domain, zinc finger family protein, expressed | ||||
STRING | OS10T0496000-02 | 1e-174 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 9e-18 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g35300.1 |
Entrez Gene | 4349003 |