PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g25640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 21919.3 Da PI: 10.7103 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.9 | 4.5e-24 | 57 | 187 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkya..tgkrknratksgyWkatgk 88 +p+Gf F P+d el+ ++k v+gk + ++v+k+++i++ + P+++ +++ e+ +yfFskr+ +++ +++r+ r+++ g+Wka+g LOC_Os10g25640.1 57 MPVGFYFVPKDLELLAILMCKLVRGKVPGAlNNVFKHIRILNsTPPSSMT-YIETmEDGYIYFFSKRQFATKarNKRRPMRVADGGTWKASGG 148 699**********************9965514569999766516778886.5555144577****998654433899999*9*********** PP NAM 89 dkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127 +k+v g +v k t+vfy + +++++kt+W mhe++ LOC_Os10g25640.1 149 SKKVG---GIDVSQKFTMVFYerrFEGDRNPVKTNWGMHEFT 187 ***95...599**********43313466778********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-27 | 51 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.942 | 57 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-14 | 58 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEGVDRIGWN LGLGFLRKER PPVHGDSGGS GGSNSNDGKW KGKEKVVPEY GKNRHGMPVG 60 FYFVPKDLEL LAILMCKLVR GKVPGALNNV FKHIRILNST PPSSMTYIET MEDGYIYFFS 120 KRQFATKARN KRRPMRVADG GTWKASGGSK KVGGIDVSQK FTMVFYERRF EGDRNPVKTN 180 WGMHEFTKII PGTKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98420 | 1e-162 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q338M0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g25640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g25640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122144 | 1e-151 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 1e-151 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 4e-84 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | Q338M0 | 1e-141 | Q338M0_ORYSJ; No apical meristem protein | ||||
STRING | OBART10G08900.1 | 1e-94 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 | Representative plant | OGRP9853 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-10 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g25640.1 |