PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g25620.1
Common NameLOC107277819, OsJ_31417, OSJNAa0011L09.8, OSJNBa0011L09.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 533aa    MW: 57452.2 Da    PI: 4.7697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g25620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.61.6e-25371722127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                        +G  F P+d el     +k v+g+    l++v+++++i++++P  L+ + +k+ee+  +yfFskr+ +++  +++r++r+tk g+Wka+g +
  LOC_Os10g25620.1  37 SVGWYFVPKDLELFAILKCKLVRGQLpGALNNVFEHIRILEFHPALLHeMYIKNEEDgYIYFFSKRQFTTKagNKRRPTRVTKGGTWKASGGS 129
                       689***********665455555555333456799************8556666666355****9986555337889**************** PP

               NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  LOC_Os10g25620.1 130 KTVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 172
                       ****99888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3430196IPR003441NAC domain
PROSITE profilePS5100530.66936193IPR003441NAC domain
PfamPF023652.7E-1338172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAELPPEGRG GGGNNNGKWK GKEKVVPEYG KNRHGMSVGW YFVPKDLELF AILKCKLVRG  60
QLPGALNNVF EHIRILEFHP ALLHEMYIKN EEDGYIYFFS KRQFTTKAGN KRRPTRVTKG  120
GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YERRFEGDRN PIKTNWGMHE FTKIIDGTKN  180
QLEDLAVYRL YKIKRKEDEE PSNTAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP  240
LLPLQLPGLA GSSSAMSLPA LQLPGMAGSS SAMPLPPLSL PGLAGGMMSM ADQANMASTS  300
QASTPSSELL QDWYDEFEIT YGAVAPPSPS TISWVAPQSS PTGWWPSPNG GPVQHDGYLG  360
MAADPTSYML ENLLPTAAIP PEPMMPPTSS PAPPPAVDHH HRLSPPHDAA GSNYNHPELA  420
DYNGGVQAQH EHQYHPQEPQ ASLVDAEDGY SAMAGGDDAQ LGGAELDTER IAEMVNHIMD  480
GEFEFKFEDN TVLKYNEVFP DNDEVVAAPM MIDGGRDGDG ADGGDGDDPF DN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.179120.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329761250.0
Expression AtlasQ8L462-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g25620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g25620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.10.0NAC transcription factor NAM-B2
TrEMBLQ8L4620.0Q8L462_ORYSJ; No apical meristem protein, expressed
STRINGOGLUM10G08700.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-13NAC family protein