PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g39810.1
Common NameB1331F11.13, LOC107275382, Os09g0571700, OsJ_30431, OSNPB_090571700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 132aa    MW: 14686.1 Da    PI: 8.0015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g39810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-191768256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +g+++AeIrd s    +  r++lg+f+taeeAa+a+++ + +++g+
  LOC_Os09g39810.1 17 KYRGVRRRP-WGKFAAEIRDSSR---HgVRVWLGTFDTAEEAARAYDRSAYSMRGA 68
                      8********.**********432...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-291677No hitNo description
PfamPF008473.0E-141767IPR001471AP2/ERF domain
SMARTSM003805.7E-331781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-311776IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-231776IPR016177DNA-binding domain
PROSITE profilePS5103223.921775IPR001471AP2/ERF domain
PRINTSPR003675.3E-121829IPR001471AP2/ERF domain
PRINTSPR003675.3E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDHHHQQQQQ EGELVAKYRG VRRRPWGKFA AEIRDSSRHG VRVWLGTFDT AEEAARAYDR  60
SAYSMRGANA VLNFPADAHI YARQLHNNNA AAGSSSSSSA AAAAARPPPI EFEYLDDHVL  120
QEMLRDHTTN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-331611913114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ651A5
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g39810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g39810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061620.0AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611263.11e-93ethylene-responsive transcription factor ERF096
SwissprotQ9LSX09e-33ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A0E0QVE63e-92A0A0E0QVE6_ORYRU; Uncharacterized protein
TrEMBLA2Z4A13e-92A2Z4A1_ORYSI; Uncharacterized protein
TrEMBLQ651A53e-92Q651A5_ORYSJ; Os09g0571700 protein
STRINGORUFI09G22030.16e-93(Oryza rufipogon)
STRINGOS09T0571700-006e-93(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-33ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]