PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29820.1
Common NameLOC4347354, Os09g0474000, OsJ_10404, OSJNBa0026C08.19, OSNPB_090474000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 174aa    MW: 19758.3 Da    PI: 9.072
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.3e-1277132358
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       e +r rr+++NRe+ArrsR RK+ ++ eL+  v  L   N++L +el++    ++ 
  LOC_Os09g29820.1  77 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSD 132
                       67899******************************************998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-1075128No hitNo description
SMARTSM003385.1E-1575139IPR004827Basic-leucine zipper domain
PfamPF001704.7E-1076131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.55377128IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-1179128No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
CDDcd147027.71E-1484128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLHHHYHGEV ASLHCLSPPS LPFSSHYHSN MITMAPSPFH FPAATCEPIQ ELLPVVAGNR  60
PAGSGSTDDA YQMAAEEERR RRRMISNRES ARRSRMRKQR QLSELRGQVV HLRDANRRLL  120
DELNQAMRGC SDVHCENARL RKERAELQTK LEHLMQAQKN NTSPSSSQPC ENI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.492010.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69JJ9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083190.0AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence.
GenBankAP0061690.0AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612405.11e-126basic leucine zipper 8
TrEMBLA0A0E0B4991e-124A0A0E0B499_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QSP81e-124A0A0E0QSP8_ORYRU; Uncharacterized protein
TrEMBLQ69JJ91e-124Q69JJ9_ORYSJ; Os09g0474000 protein
STRINGOGLUM09G14340.11e-125(Oryza glumipatula)
STRINGORUFI09G14730.11e-125(Oryza rufipogon)
STRINGOS09T0474000-011e-125(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP1312045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.14e-10basic leucine-zipper 43