PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g24820.1
Common NameLOC4347054, Os09g0414600, P0707C02.7, ZHD9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 342aa    MW: 35323.6 Da    PI: 7.9103
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g24820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.14.2e-333994458
       ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                      ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr +e
  LOC_Os09g24820.1 39 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLRCAACGCHRNFHRRLPE 94
                      78*****************************99********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.8E-283992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-304191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-244191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7524192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.85E-16198265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28201266IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-23207263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGETV YRECLKNHAA SLGGHALDGC  60
GEFMPSPAAN PADPTSLRCA ACGCHRNFHR RLPEGSPPPP PPPALLPAPP MPPHRGEETP  120
EVRLPGVDGD ESDSDSDGSE YDDERSVSPP PPPLAAAVAH QVYYPSAPHM LLSLGSSGQA  180
QRLPPQVMSP AAAAAPPPGG GGGGMPRKRF RTKFTAEQKQ RMQELSERLG WRLQKRDEAI  240
VDEWCRDIGV GKGVFKVWMH NNKHNYLGGH SARRSASSSS AAAAAAPPFN PPTSPPPPPP  300
PPPHATDFNI NGTATAATAA AAATIAAGNH QENGASSPQS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-212072651775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008270.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329795240.0
Expression AtlasQ6ER21-
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g24820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g24820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056360.0AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.10.0zinc-finger homeodomain protein 9
SwissprotQ6ER210.0ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLI1QRX41e-145I1QRX4_ORYGL; Uncharacterized protein
STRINGORGLA09G0074600.11e-145(Oryza glaberrima)
STRINGORGLA09G0180300.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.15e-49zinc finger homeodomain 1
Publications ? help Back to Top
  1. Hu W,dePamphilis CW,Ma H
    Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families.
    J Integr Plant Biol, 2008. 50(8): p. 1031-45
    [PMID:18713354]