PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g16510.1
Common NameLOC4346768, OJ1253_E02.7, Os09g0334500, OsJ_28937, OSNPB_090334500, P0466E03.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 362aa    MW: 37944.1 Da    PI: 6.4041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g16510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.69.2e-27125185158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+r++ed +v++++Y+geH++
  LOC_Os09g16510.1 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCMATKQVQRTDEDATVFDVIYHGEHTC 185
                       59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-27114186IPR003657WRKY domain
PROSITE profilePS5081121.884120183IPR003657WRKY domain
SuperFamilySSF1182901.44E-24121185IPR003657WRKY domain
SMARTSM007748.0E-39125187IPR003657WRKY domain
PfamPF031063.0E-26126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS  60
GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV  120
ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRHSQGCM ATKQVQRTDE DATVFDVIYH  180
GEHTCVHKAV AAGAGKPETE TDTNAAAESR LHDLSSGLTV KIEGLTAPPQ QQQGGGGWNA  240
MPPFCLSSPV SGLAPPDQHN PFSAPSTPEN RLAAAASSAA SPATSDSMAA APFHQAAAGG  300
GDEAWRDAEL QEVVSALVAA TTTTATAQPA PATAMVDADL SALDAFEFDP GFTIDITSFF  360
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22125185868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272270.0flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329752830.0
Expression AtlasQ6ERI5-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g16510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g16510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769300.0AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651250.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0QPY90.0A0A0E0QPY9_ORYRU; Uncharacterized protein
TrEMBLQ6B6Q90.0Q6B6Q9_ORYSI; Transcription factor WRKY74
TrEMBLQ6ERI50.0Q6ERI5_ORYSJ; Os09g0334500 protein
STRINGORUFI09G06720.10.0(Oryza rufipogon)
STRINGOS09T0334500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-33WRKY DNA-binding protein 46