PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g13940.2
Common NameLOC4346686, Os09g0309700, OSNPB_090309700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 319aa    MW: 35680.2 Da    PI: 5.1888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g13940.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-1671120154
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       s+y+GVr++  +g+W+AeIrd +     r  r ++g+f ++eeAa+a+ a  ++++
  LOC_Os09g13940.2  71 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 120
                       89*****777.**********44.....55******************88766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-971114IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1671124IPR016177DNA-binding domain
CDDcd000181.47E-1471104No hitNo description
Gene3DG3DSA:3.30.730.106.1E-2072114IPR001471AP2/ERF domain
PROSITE profilePS5103218.6572129IPR001471AP2/ERF domain
SMARTSM003803.3E-1472126IPR001471AP2/ERF domain
PRINTSPR003671.5E-87384IPR001471AP2/ERF domain
PRINTSPR003671.5E-895111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMVPSSRKVR VFCSDPDATD SSDEDDQNKK ERRFSREILI PMENSKASKP VKTLVQCGTK  60
TVKDSEKEPT SKYRGVRRRA WGKWAAEIRD PVRKSRKWIG TFNSEEEAAA AYLAQSNQFH  120
EELMALKIQS SVSEQEDLSS SVTISCVSSS QSCDQKIQAK PQEHKRVSVV VNRETVEQKF  180
KAQPQAQKIK AQPEVQKRVS VKISHETEDE HLLNLPSTPK GKEISMGAVL GRIDEIPVSN  240
CVGHIDEFPP DDFTRLADAF PVSDFIGMAD VPLGDDYIGL ADISHLPLPI TDLKFDLNAE  300
LNWDGFDFAS LEQELNCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.548310.0callus| flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329857840.0
Expression AtlasQ0J2R6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g13940.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g13940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005750.0AK100575.1 Oryza sativa Japonica Group cDNA clone:J023105G21, full insert sequence.
GenBankAP0056870.0AP005687.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0019B22.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651274.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651275.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651276.10.0ethylene-responsive transcription factor ERF117
TrEMBLQ0J2R60.0Q0J2R6_ORYSJ; Os09g0309700 protein
STRINGOS09T0309700-010.0(Oryza sativa)
STRINGONIVA01G05270.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-17ERF family protein