PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g13940.1 | ||||||||
Common Name | LOC4346686, Os09g0309700, OSNPB_090309700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35680.2 Da PI: 5.1888 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.7e-16 | 71 | 120 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+y+GVr++ +g+W+AeIrd + r r ++g+f ++eeAa+a+ a ++++ LOC_Os09g13940.1 71 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 120 89*****777.**********44.....55******************88766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-9 | 71 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 71 | 124 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.47E-14 | 71 | 104 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-20 | 72 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.65 | 72 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-14 | 72 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MMVPSSRKVR VFCSDPDATD SSDEDDQNKK ERRFSREILI PMENSKASKP VKTLVQCGTK 60 TVKDSEKEPT SKYRGVRRRA WGKWAAEIRD PVRKSRKWIG TFNSEEEAAA AYLAQSNQFH 120 EELMALKIQS SVSEQEDLSS SVTISCVSSS QSCDQKIQAK PQEHKRVSVV VNRETVEQKF 180 KAQPQAQKIK AQPEVQKRVS VKISHETEDE HLLNLPSTPK GKEISMGAVL GRIDEIPVSN 240 CVGHIDEFPP DDFTRLADAF PVSDFIGMAD VPLGDDYIGL ADISHLPLPI TDLKFDLNAE 300 LNWDGFDFAS LEQELNCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54831 | 0.0 | callus| flower| leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985784 | 0.0 | ||||
Expression Atlas | Q0J2R6 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g13940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g13940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100575 | 0.0 | AK100575.1 Oryza sativa Japonica Group cDNA clone:J023105G21, full insert sequence. | |||
GenBank | AP005687 | 0.0 | AP005687.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0019B22. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651273.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Refseq | XP_015651274.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Refseq | XP_015651275.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Refseq | XP_015651276.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | Q0J2R6 | 0.0 | Q0J2R6_ORYSJ; Os09g0309700 protein | ||||
STRING | OS09T0309700-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G05270.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5020 | 37 | 63 | Representative plant | OGRP13108 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 3e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g13940.1 |
Entrez Gene | 4346686 |