PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g10840.2
Common NameLOC4346610, OsJ_28661
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 476aa    MW: 52155.1 Da    PI: 8.619
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g10840.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.8e-11189217533
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                       k  rr+++NReAAr+sR+RKka+i++Le 
  LOC_Os09g10840.2 189 KTLRRLAQNREAARKSRLRKKAYIQQLES 217
                       6789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-6185247IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.6E-8187229No hitNo description
PROSITE profilePS502178.795187229IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-7189223No hitNo description
PfamPF001707.7E-9189218IPR004827Basic-leucine zipper domain
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141445.0E-27274346IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGGSREEDRQ HHNHLPSELP LGFRSSSPTT MIASSSMSKE SSNYDMADFD QASLFLYLDS  60
HDQQSIQEQR QTLNIFPSQP MHVADPAHEA KSAGVAMAML PNGNQLQVLP SHPSKKPDQQ  120
GGQKINSSVP TNPPGPNLPL PNSAKDNKNS SLIKGPKKCG LQKEGSSSGK GATTSNDPER  180
EGRRTLDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLSQLEQQVH VARVQGAMLG  240
AGDQHQGLPS GPSAASLFDL EYGRWVEEHS KLIFQLRAAL NEQMADSQLQ VFVNGAMAQH  300
DELLSLKGAI ARADIFHLLC GVWATPAERC FLWLGGFRPS EAIKVMLKQV EPLSEGQLMS  360
IYELQQAAKG TEDALSHAMD GLQQSLSDTV AAPDVAAAGG FMGHMSLAMN KISAMEDIVR  420
QADGLRQQTL HKLQHMLTIR QAARCFVAIS DYFHRLRALS TLWVARPRPE EGPAM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.494970.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329921970.0
Expression AtlasA3BWV0-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g10840.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g10840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069880.0AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651202.10.0transcription factor TGAL7 isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA3BWV00.0A3BWV0_ORYSJ; Uncharacterized protein
STRINGORUFI09G03940.10.0(Oryza rufipogon)
STRINGOBART09G03520.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-125bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]