PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os08g38220.1

Common Name

LOC4345900, Os08g0490100, OsJ_27751, OSNPB_080490100, P0605H02.27

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 277aa MW: 28856.9 Da PI: 7.2096

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os08g38220.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.3e-37	59	117	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss LOC_Os08g38220.1 59 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 117 5678**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	60	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	61	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-31	62	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009030	anatomy	carpel
PO:0007130	developmental stage	sporophyte reproductive stage
PO:0007606	developmental stage	gynoecium development stage

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MQEQQPETGR RPAQQFATVD LRRPKGYAAA PATPQPGSAA TAAAAAGPAA TAAAAAAGEG 60 DPCPRCESRD TKFCYYNNYN TSQPRHFCKC CRRYWTKGGT LRNVPVGGGT RKKSSSSSSS 120 SSSSSAAAAA PAAKRQKTSK KRRVTTPEPL AATTPVLTEA AADSAAKTTT EATSEKKTTT 180 STTTTTPPAP DTTSEITTEL VVPAVEEDSF TDLLQPDSAA VTLGLDFSDY PSITKSLADP 240 DLHFEWPPPA FDMASYWPAG AGFADPDPTA VFLNLP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.58835	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116010729	0.0
Expression Atlas	Q6ZBQ1	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues examined.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os08g38220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os08g38220

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241364	0.0	AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence.
GenBank	AP004620	0.0	AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650493.1	0.0	dof zinc finger protein MNB1A
Swissprot	P38564	2e-69	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0E0IDM2	0.0	A0A0E0IDM2_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QKJ0	0.0	A0A0E0QKJ0_ORYRU; Uncharacterized protein
TrEMBL	Q6ZBQ1	0.0	Q6ZBQ1_ORYSJ; Os08g0490100 protein
STRING	ORUFI08G21040.1	0.0	(Oryza rufipogon)
STRING	OS08T0490100-01	0.0	(Oryza sativa)
STRING	ONIVA08G20810.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-28	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	LOC_Os08g38220.1
Entrez Gene	4345900

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]